BAC Information

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BAC

Clone NameMSMg01-098P14
Chromosome9 (Build37)
Map Location 38,254,861 - 38,255,255
singlet/doubletsinglet
Overlap genenone
Upstream geneBC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901
Downstream geneOlfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098P14.T7 (MSMg01no098_p14.b1)MSMg01-098P14.TJ (MSMg01no098_p14.g1)
ACCAG315018AG315019
length707787
length of high quality
(start - end)
371 (61 - 431)87 (181 - 267)
definitionCHROMAT_FILE: MSMg01no098_p14.b1 PHD_FILE: MSMg01no098_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:15 2005CHROMAT_FILE: MSMg01no098_p14.g1 PHD_FILE: MSMg01no098_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTAAACGACTCACATACAGAAGAGGATCCGCGGAATTCAAGAT
TTACCGTTACAGTAAGTATAATCACATAGACATATCAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGCGCACTGC
GGGTGTACCTGTAATTCAGAAGATGATTGGGGAAATGAGAGTGAGATCGT
ATTTTTCTACATCCACTGCAGGATACATGTACCACAAAGTGAAGAGAAAA
TACACGGGTCCCTCAAGATCTAAAAACAAATCATCATCCAGGGTGTAACA
CAATTCCCAAGTTCACTCTTCTATCTAAATGTTTTTCTCTGGAGAAGAGA
CAGCCACACATCCACATTGTTTATAAGCAAATACGTTCTGCAGCTAAGCC
CACAGGAAATCCTCTGTGCCTTATCATTGGCAGTGCGATGATACCATCAC
AATTCATATTTTTTCTGCTTCAAGTAAAGACTCAAAGTATTAATCACAGA
TTATGTTCTAAAATTCAATCATCATTCCAGGAACATTCAGGCACTAAGTT
TTGTCTACCCCTTCCTACACTGAATATATATGATTTACCTCCCTGGAAAC
TGAATCATTTCTTCCACATTAACATGTATAAATACGAGCCCAAGATATCT
TTCAGCGTTGGCTTGGAATATCTAGCATTGGCAGTAAGTGTCTCTCCTTG
CTTTCTC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCNNNN
NNAATTCCCTNNNNNTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCGTG
ATCTTCTGGATTCCTCCAATGGCTTGGGTCAGTTCTCCAGTTCTGCCCTT
TGTAGCACACACCTCATCCTCTAGGCTCCAGATGCCTGTACTCCACTGTT
GCTGTTGTTCTTGGCAGACATTCATGGTACTGGCATCTCCAAAACACTGC
TGTTTTCTGCTATAACTAGGGCTCACCAATAGCCTCTCATAGGCTCTTTT
CTTGGTGCCAAGCCTCAACTCCTTTGCATGACTCCTTCAAGTCCTTGGCC
ATCAACTACAACAGAGGCTGTACTTTCTCTAATGCTCTTGCATGTCCTCT
CACAGTGCCCAGCATCAGATGTTCTTCTTGGCACCTTCATGTCTTCAAAC
CATTACCACCTGCGGTGAGCCTTACATGTTACCCAGTCCAGCCACAGTAC
AAGGTGCAACTTCGACTATCTCTGGAACACAGCCTCTGTGCTCTCCCAAA
ACACTTCCCAAAAAATTCCCCCTCCACGATGCTGGTCCCCTCTTACCTAC
CACTATATTCTAACCTCCACTTACCGACCATCCTTATTCCCCAATAATGC
ACCCTTTTGCCTAAGAAGTACTGGTACGTCCTTAACCACAACTGATATCT
TCCTTCCTCCGCCACCTTATATTCACACAACCCTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_p14.b1 MSMg01no098_p14.b1 CHROMAT_FILE:
MSMg01no098_p14.b1 PHD_FILE: MSMg01no098_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:15 2005
         (371 letters)



>mm_chr9_38254685_38255455
          Length = 771

 Score =  613 bits (317), Expect = e-180
 Identities = 365/395 (92%), Gaps = 24/395 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtaagtataatcacatagacatatcagagagag--agagagaga--gagagagagagag 56
           ||||||||||||||||||||||||||||||||||  |||||||||  |||| ||||||||
Sbjct: 177 agtaagtataatcacatagacatatcagagagagacagagagagagcgagaaagagagag 236

                                                                       
Query: 57  agagagagagagagagagagaaagagcgcactgcgggtgtacctgtaattcagaagatga 116
           ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 237 agagagagaaagagagagagagagagcgcactgcgggtgtacctgtaattcagaagatga 296

                                                                       
Query: 117 tt--------------------ggggaaatgagagtgagatcgtatttttctacatccac 156
           ||                    ||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ttggggaaatgagagtgagatcggggaaatgagagtgagatcgtatttttctacatccac 356

                                                                       
Query: 157 tgcaggatacatgtaccacaaagtgaagagaaaatacacgggtccctcaagatctaaaaa 216
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tgcaggatacatgtaccacaaagtgaagagaaaatacacgggtccctcaagatctaaaaa 416

                                                                       
Query: 217 caaatcatcatccagggtgtaacacaattcccaagttcactcttctatctaaatgttttt 276
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 417 caaatcatcatccagggtgtaacacaattcccaagttcactctactatctaaatgttttt 476

                                                                       
Query: 277 ctctggagaagagacagccacacatccacattgtttataagcaaatacgttctgcagcta 336
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 477 ctctggagaagagacagccacacatccacattgtttataagcaaatatgttctgcagcta 536

                                              
Query: 337 agcccacaggaaatcctctgtgccttatcattggc 371
           ||||||||||||||||||||||||| |||||||||
Sbjct: 537 agcccacaggaaatcctctgtgcctgatcattggc 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)