BAC Information

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BAC

Clone NameMSMg01-099M13
Chromosome9 (Build37)
Map Location 15,395,145 - 15,395,298
singlet/doubletsinglet
Overlap geneCcdc67
Upstream geneAmotl1, EG665374, Piwil4, Fut4, 1700012B09Rik, Ankrd49, Mre11a, LOC100040259, Gpr83, Folr4, Panx1, Hephl1, 2200002K05Rik, Crsp6, 4931406C07Rik, Josd3, 5830418K08Rik, LOC100040375, LOC100039955, BC017612
Downstream geneLOC665461, LOC330891, Slc36a4, Mtnr1b, Fat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099M13.T7 (MSMg01no099_m13.b1)MSMg01-099M13.TJ (MSMg01no099_m13.g1)
ACCAG315640AG315641
length714686
length of high quality
(start - end)
157 (47 - 203)34 (161 - 194)
definitionCHROMAT_FILE: MSMg01no099_m13.b1 PHD_FILE: MSMg01no099_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:25 2005CHROMAT_FILE: MSMg01no099_m13.g1 PHD_FILE: MSMg01no099_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATGCGCGG
AATTCTCAGTATTTCACGTTTTGAAGAGATAGTCTGATTTCTTTAACAGT
TCACTGGTATGGAACTTTCTTCTGAGAATCACAAAGCTAATGAAACAAAC
ATGGTTTCTAAACCTCTGAATAGCTAAGTGATCTATTTTACTTCAAAGTT
GTAGTACATGGTAACATGGGGAGATAGCTCAATAGTTACGAGCAAAGACA
GATCTTCCAAAAGACCAAGGTTCAACTCCCAAGACTCACATGGCAGCTCA
TAGTTTTCTGCAGCTCTAGCCCCATAGTGTCCAATGTCCTCTTGCGACCT
ATACTGGCACTATACACACTCATATGGCGCACAGACCTGCATACAGGCAG
AATGTCCATATACATAAAATAAAAATAAATCTTTTTTACCCAGCCAGTGT
CAGGCCAAGCATAATGGTGCAGGCCTTTACATCTGAATACTAGGGAGGCA
TATGCAGGCCCCTCTCTGTGAGTTTTATTACCCCTCTGCTCTACACAGTG
ATTCTCATTGCACCTCAGTTGCCACCCCCTTGATTCCCCCAATTACCGTT
TTGTTCTTATTCCCCCCATTCCTTCCCCCTTTTTTCCCCCCTCTTTTATC
CTTCCCCCCTTCTCTTTTTTTCCCTCTTCCCCCCTTTTTCTTTCTTACCT
CTTCTTTTCTTCCN
CCTGTCTCCCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTG
GTGCATGCAGCAGACTAGACATACCAGGAAGGCTATGATTCTATTAGAAA
CCTTCTCAGCAATGACAGTGGCCATGGTAGCTGAGAGGATCCCCTGCATA
AGACGGAGGTGTGAAGTGGCTTCCCTGGGAGGCATTGATTTTGAGTGAAT
GAGTCAGACCATGACCAGAGGACAAAGATGGCACAGGAGCAGATATCATG
GCAATGTCACTTTTCTCCCTGCTGTGACGAAATAAATACCTGACACCGAT
TGTAGTGTTTATTCTGGCTCACACTTTGAGAATACCGTTTTTTGTGGCCG
AGCATTACACCGCAATAGATGGTAGGGCGAGGCAGCTGCATGTCCGCATG
CCCAGTCCTGTAACCTGACAAAGACTGTGGTTTGAATGTGCTTGTCCCAT
GGAGTGGCACTATTATGAGGCGTGGCCCTGCTAGAGGAAGCGTGTTTCTG
TGGACTTCGACACCCCTCCCCTACCTGTCTGGACTATAGCCTTCCCCCTA
TTTTGCCTTGCCATCCGATGCACCCCCCCTTTTTTTTCTTCTCCCCCCCC
TTTCCTGCCCTGCCCCGTTGCCCTTGCTTCCCTGTTTATCCCGTTCGGCC
CATCCCCCCTCCTGCCTCTCGTCCCTTTTTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_m13.b1 MSMg01no099_m13.b1 CHROMAT_FILE:
MSMg01no099_m13.b1 PHD_FILE: MSMg01no099_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:25 2005
         (157 letters)



>mm_chr9_15394942_15395498
          Length = 557

 Score =  275 bits (142), Expect = 1e-78
 Identities = 151/154 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattctcagtatttcacgttttgaagagatagtctgatttctttaacagttcactggta 63
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gaattctcagtatttgaggttttgaagagatagtctgatttctttaacagttcactggta 298

                                                                       
Query: 64  tggaactttcttctgagaatcacaaagctaatgaaacaaacatggtttctaaacctctga 123
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 297 tggaactttcttctgagaatcagaaagctaatgaaacaaacatggtttctaaacctctga 238

                                             
Query: 124 atagctaagtgatctattttacttcaaagttgta 157
           ||||||||||||||||||||||||||||||||||
Sbjct: 237 atagctaagtgatctattttacttcaaagttgta 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 557
Length adjustment: 8
Effective length of query: 149
Effective length of database: 549
Effective search space:    81801
Effective search space used:    81801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)