BAC Information

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BAC

Clone NameMSMg01-100E07
Chromosome9 (Build37)
Map Location 46,593,169 - 46,593,474
singlet/doubletsinglet
Overlap genenone
Upstream geneCep164, LOC640094, Bace1, Rnf214, Pcsk7, Tagln, Sidt2, Pafah1b2, 2610005M20Rik, BC033915, Apoa1, Apoc3, Apoa4, Apoa5, Zfp259, Bud13, 4931429L15Rik, LOC100042722, EG667890
Downstream gene2900052N01Rik, D930036J05, Cadm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100E07.T7 (MSMg01no100_e07.b1)MSMg01-100E07.TJ (MSMg01no100_e07.g1)
ACCAG316011AG316012
length708715
length of high quality
(start - end)
372 (45 - 416)477 (75 - 551)
definitionCHROMAT_FILE: MSMg01no100_e07.b1 PHD_FILE: MSMg01no100_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:04 2005CHROMAT_FILE: MSMg01no100_e07.g1 PHD_FILE: MSMg01no100_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTCTCTTTGTGACAGCCACAATTGTGGAATTGAAACATAGAGTAAT
GGTTAGTAGAGGCTGGGATGGGTAGAGTCAGAAAGAGACTAGTTGGTTGA
TGGTTATGACATTATAGTTAGGGGCAAGTTCTCTTGTTCCATAGCACAGT
GCAGTGAGTAGAGTTGATAATTATGGTACATTTAAATTTTAATGGGCAGA
GGAGAGAATTTTGAATGTTGTCACCACAAAGGAAGGATGCATTTTTGAGG
TGCTGTGTATGCTAATTACTCTTATTTGATCATTACACATTTTATACATG
TATCAAAATATCACACTGTTCCTTATAAACATGTATAATAATTACATGTC
AATTAAGGAACAAACCAGCAAACAAAACACTCACACAGAAACCTACATTT
TAGATAGTAGGTTAATTTGGGTGACTTGAGAGCACCCACGATAGTCTTTT
CCCATGGAGAGGGTTTCTTTCCTGCTTCCTAATTCCTCCTACTCAATGAC
CTTCTCATAAGAACCTAACGCCTTCGACCTACTCTTGAAGTTGCGCAAAC
ATTCTCCTAGCGGCACCTTTACTTATTACCCCCCATCCTCCTTCCACCCA
TTATGGCCCCCCTAAGTTGTCTCTCTCTGTCCCGCCCCTCCCACGTCTTG
CCCTGTCG
GAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGCCTAGATTCAGCTGGGATCCCTTG
TGCAATCTGTGGCCACCTGCAGGTCAATGAGGTGGCTCTGCTTCTAGGGT
TCAACTGACTGTCAATTTGGCATGAGGGACAATTGGGCCACGTGTCTCCT
ACCATTTCATCCAGCAGGCTGGGCTGGATGGCAGCAAGGTCCTAACAATG
TGAATAGAAGCAGGTGGGCTTTTGAGGACTAGGTTTGGGACTAACATACC
ATGGGGCATTCTGTTGACCCGAACAAGTCACAGAACAGCTCAGATTCAAA
AAGTGTTAGTATATAGTCAACCCTTTGGTGGTAGTTGCTGCAAAGCCATG
TGTTAAAGTATAGGGATGTAAAGAACTGTGGCCACCTTTTACAGTGGTGA
GCCAGGACTAGAATTCAAGTCTCCATAAGCAAGGCACAGAGTTCCTTCTG
AGTCCTATATTGCCCAACCCTTCTCTGCTTCCATTTCTTATCCTCAATAC
CTCTGTAAAAATCGGGAGTGCCAGAAGAAAAACACAACTCTAAGGCAGTG
ATGGTCACGGTCTTCTTGGTGTAGAGTCAGGAGAATTGCCACAAGCATAC
CTTTCACTGGGCTCTCCCCACGCTCTTCCTAAAATTACTCTTCCTCCTTC
CGCACCCTTAACTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_e07.g1 MSMg01no100_e07.g1 CHROMAT_FILE:
MSMg01no100_e07.g1 PHD_FILE: MSMg01no100_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:05 2005
         (477 letters)



>mm_chr9_46592598_46593474
          Length = 877

 Score =  584 bits (302), Expect = e-171
 Identities = 305/306 (99%)
 Strand = Plus / Minus

                                                                       
Query: 172 caatgtgaatagaagcaggtgggcttttgaggactaggtttgggactaacataccatggg 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 caatgtgaatagaagcaggtgggcttttgaggactaggtttgggactaacataccatggg 818

                                                                       
Query: 232 gcattctgttgacccgaacaagtcacagaacagctcagattcaaaaagtgttagtatata 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 817 gcattctgttgacccgaacaagtcacagaacagctcagattcaaaaagtgtgagtatata 758

                                                                       
Query: 292 gtcaaccctttggtggtagttgctgcaaagccatgtgttaaagtatagggatgtaaagaa 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 gtcaaccctttggtggtagttgctgcaaagccatgtgttaaagtatagggatgtaaagaa 698

                                                                       
Query: 352 ctgtggccaccttttacagtggtgagccaggactagaattcaagtctccataagcaaggc 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ctgtggccaccttttacagtggtgagccaggactagaattcaagtctccataagcaaggc 638

                                                                       
Query: 412 acagagttccttctgagtcctatattgcccaacccttctctgcttccatttcttatcctc 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 acagagttccttctgagtcctatattgcccaacccttctctgcttccatttcttatcctc 578

                 
Query: 472 aatacc 477
           ||||||
Sbjct: 577 aatacc 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)