BAC Information

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BAC

Clone NameMSMg01-100K04
Chromosome9 (Build37)
Map Location 100,426,359 - 100,426,595
singlet/doubletsinglet
Overlap geneNck1
Upstream geneArmc8, Dbr1, A4gnt, Dzip1l, Cldn18, EG667429, Sox14, LOC667456, 4930519F24Rik, LOC100040590, Il20rb
Downstream geneLOC633385, Tmem22, LOC667486, Stag1, LOC100040990, Pccb, LOC100041013, LOC100040707, Msl2l1, 3222402P14Rik, LOC100041065, EG382099
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100K04.T7 (MSMg01no100_k04.b1)MSMg01-100K04.TJ (MSMg01no100_k04.g1)
ACCAG316281AG316282
length756742
length of high quality
(start - end)
237 (186 - 422)451 (133 - 583)
definitionCHROMAT_FILE: MSMg01no100_k04.b1 PHD_FILE: MSMg01no100_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:34 2005CHROMAT_FILE: MSMg01no100_k04.g1 PHD_FILE: MSMg01no100_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACGACGCAAGTNNCNTTTTCTATTCTCTTAATTATTCATCCTGGCCCC
CCCCACACCCNCCNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCC
AAAGAGGATCCGCGGAATTCTGTTATCTCACCACACACACACATCATTGT
TAAACTGCTGTCATTTGAGTCCAAGTATCTGGATGGTATTCACTCTGAGT
CTATTTGTATGTAGTTCACATCAGAATTGACTCAGATGTTCACGGCTCTA
CATATTTTTGGTTAAGAACTGTGCCAATATTGAAGCAATCTGCCCTTACA
ATTTGTTGGCTATATTGCTGAGCAAAAAGTGTCCACTTCACCAAACAAGT
CATCAGGTCAGTTACCAGAGCTCTACCTGGCTATTTGTGTGAATGCTTTT
GGTACCATTCAGCTGGAGTTCAGGAACAGGACAGCCTGTTAGCAATCACT
GCTGACAGAGCTTACAACCCTAATCCCCCGCCCGCACCACTACACATCTA
CACATTTCTCAGATCCCACCTCACGTCTATACTTGACAGATGTTGGTCCT
ATCTCCACCAGCAGGCTACCTACTGTATGCTGCTATTGTCTTTCTAACAG
CAATTCACGTAACAATGTTCCCACCCCCCACTATTCTGTCCCCAAACTTC
CCTTCACAGTCATCTGCTTATTCATGCCTTACTGGTTCAACCTCTATTAA
CTTTTCTTTCAAGCAATTTACTCTATCTTAAGACTCTCCCCTCCCTTCTC
TTTTTA
NNNNGGGGGGTGTTTGTTTTTTTGTTGCTGGGGTGCCCCCTTCCCCCCNN
CCCCNNNNNCCGATGATATGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCTGGCAAGGATATGG
AGAAAGAAAATGATGCAGCTATAAATTACCATAGCAATGGAAAACTGTAA
CACACATACCAGAATAACCAAACTACTACACAGTCGAGTCATCCCAATGA
GTATATATCCAAGAGAAAGAAAATTCAGTACGGCAAAAAGATATCGAAAC
TCGGTTGACCTAATTGTCTATAAATAGAAGTATCGATATAGAAAATGTGG
TATGCATACACCATGCAAGGTAGTCTATTTAACAGTAATGTACGGGAAAA
AATATTTTTTAAGATTTATTTACTGACTATATGTAAGTACACTGTAGCTG
TCTTCAGACACTCCAGAAGACCCCACCAGATCTCCTTACGGATGGTTGTG
AGCCACCATGTGGTTGCTGGGATTTGAACTCCAGACCTTCGGAAGAGCAG
TCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCTGTACGGAAAAT
TTTAAAACATCTTGAGCAATTTTCAATGCTATCACCATAATAAAACTGTA
AATGCTTGAAGTGATGGATCCGTTAATTACCCTGATTTGCTAACATATGC
ATCCAAACAGCATGGCCCTTAAGCATACTGCATGCGCTGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_k04.b1 MSMg01no100_k04.b1 CHROMAT_FILE:
MSMg01no100_k04.b1 PHD_FILE: MSMg01no100_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:34 2005
         (237 letters)



>mm_chr9_100426159_100426795
          Length = 637

 Score =  420 bits (217), Expect = e-122
 Identities = 232/237 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtattcactctgagtctatttgtatgtagttcacatcagaattgactcagatgttcacgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 gtattcactctgagtctatttgtatgtagttcacatcagaattgacttagatgttcacgg 260

                                                                       
Query: 61  ctctacatatttttggttaagaactgtgccaatattgaagcaatctgcccttacaatttg 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctacatatttttggttaagaactgtgccaatattgaagcaatctgcccttacaatttg 320

                                                                       
Query: 121 ttggctatattgctgagcaaaaagtgtccacttcaccaaacaagtcatcaggtcagttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggctatattgctgagcaaaaagtgtccacttcaccaaacaagtcatcaggtcagttac 380

                                                                    
Query: 181 cagagctctacctggctatttgtgtgaatgcttttggtaccattcagctggagttca 237
           ||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||
Sbjct: 381 cagagctctacctggctacgtgtgtgaatgcttgtggtaccattcagctggagttca 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)