BAC Information

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BAC

Clone NameMSMg01-100N21
Chromosome9 (Build37)
Map Location 25,351,338 - 25,351,771
singlet/doubletsinglet
Overlap gene2310005P05Rik
Upstream geneCypt4, Tbx20, LOC666251, LOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7, EG666327
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100N21.T7 (MSMg01no100_n21.b1)MSMg01-100N21.TJ (MSMg01no100_n21.g1)
ACCAG316445AG316446
length709898
length of high quality
(start - end)
453 (43 - 495)---
definitionCHROMAT_FILE: MSMg01no100_n21.b1 PHD_FILE: MSMg01no100_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:53 2005CHROMAT_FILE: MSMg01no100_n21.g1 PHD_FILE: MSMg01no100_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCCAATTCCAAAAAAAAAAAGACCTATAGAGTGTTCTTGTCCATGTCC
TCAGGGGCTACTGAAGTCTGCTGCATTTGTAGCTCTGAGCTACCCAGATT
GCCGCTGGCCTCTGGCTTTCCTCTGATGCGGTGGTACTAGTCTTCACCAC
GGGAGAGTGAACTCTGCACAGCCTCTCCTAGTCCTCTTAGAGACTTCACT
GTGGCAGCTGTCACTCTTGGAAAAAAGACAGTGCTCTACAGCACATTGCC
CTCTTATGTGGCATAACTTAACTGTGTGTATTCTAGATGCTTCCAAGAAT
TGCTTGTGCTCTAACCTGGCCATTGATATTCTTTCTGAATCAAATCAGTG
CTGGTAGCTGACGTTTGTGCTTTCCTGCTCTTCTTTAAGTGGGGCACAGG
AAAAGGAAGGACTGTTCATAGCAGTGTTCATCTGCCTGGGCTCTGAAGCT
CTTAGAGAATGCTGATTATGTACCAGGCTTCCTGAAGAATGTGCTCTTGA
GACCCTGATCCACTCTGGCATGTGGGACGAGCTAAATATCACACACTCCT
GTCTCCGGGCATGTGTGACTAAGCAGCACTTTTGTTCCTTACAGCCCTTG
AAGGCAGGGACCTTATTGTGCTCACGTGGATCCCCATCCCCATTATCTAC
CGCTGTATT
NNNNNNNNNNNNNNNNNNNCCCCNNCCCCCCCCCCCCCCCCCCCACTACC
NTNNCCCACGAATGAAGTGGNAGGCCTGGNGGCCGCCTTTTCGTCATTCG
GGAGGNGACACTATAGAATTACCCAAAACAAGGCNGCNNGNNCCANGGGA
NGCNGAGGAGGNGGGGGGCANNCAGCCCNAAAGGGCGAAGACNCGACCAC
AGCCANCNACNGGCNAGGGNNGNAGGAGAACAAGGGNGNNNCNAGCNCAA
CCCCNAAAACCCAAAACAGAGGANAAGGGAAAAGCCCACAGAACAAAGCG
CCGGGAGCACCCGCGAACCCAAAAAACAGGGAGCAGGAANCNCGACCCCA
CNANCNCAGAGCCCAGGGCCCCCAAAACCCNCCCCCCNNCCGGGTTTTTG
TTTCNCANCACGACAACACAACCACAGGGGCGGAACAGCAGATTCNCCGC
CCCCCCCCCCGGCCCGCAGANNAGGAGGAAAAAAGGAGCACGNNGGNCGG
CAGCAAGCGCACCAGCAAGAAGCACAGAAAGCGAGCCCAGCGACGGAGAC
ACNGGAAACGCAGGCCAGAACAGGCAAAAAGAGCAAACCCAGAGCCCAGA
AAGACAGAAAGCGAGCNAGGGGCCCCAACAAGAAGCCCACCCCAAAGGCA
AGCGGGCCGCGAACGCCACAAAGGAACCCCGACGGCAGGNCGACGCGCCC
GACAACAACCACCAGCCCAAGANACCACGCACNCGAGAAACCAAGCAGCC
AAAACAANCCAACAGGAAGCCCAGGAGGCAACGAAGGCCCCAGCAAGCGA
GAAGAACGAAACGGGGATCTTATTATTTCATGAAGAGGGCAAGACAACAA
CCGCTGCCCCAATCCTTCGCAAACTTGTTACTGCTATCGGCATCTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_n21.b1 MSMg01no100_n21.b1 CHROMAT_FILE:
MSMg01no100_n21.b1 PHD_FILE: MSMg01no100_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:53 2005
         (453 letters)



>mm_chr9_25351119_25351971
          Length = 853

 Score =  816 bits (422), Expect = 0.0
 Identities = 431/434 (99%)
 Strand = Plus / Plus

                                                                       
Query: 20  aaaaaaaaaaagacctatagagtgttcttgtccatgtcctcaggggctactgaagtctgc 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 aaaaaaaaaaagacctatagagtgttcttgtccatgtcctcaggggctactgaagtctgc 279

                                                                       
Query: 80  tgcatttgtagctctgagctacccagattgccgctggcctctggctttcctctgatgcgg 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tgcatttgtagctctgagctacccagattgccgctggcctctggctttcctctgatgcgg 339

                                                                       
Query: 140 tggtactagtcttcaccacgggagagtgaactctgcacagcctctcctagtcctcttaga 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tggtactagtcttcaccacgggagagtgaactctgcacagcctctcctagtcctcttaga 399

                                                                       
Query: 200 gacttcactgtggcagctgtcactcttggaaaaaagacagtgctctacagcacattgccc 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gacttcactgtggcagctgtcactcttggaaaaaagacagtgctctacagcacattgccc 459

                                                                       
Query: 260 tcttatgtggcataacttaactgtgtgtattctagatgcttccaagaattgcttgtgctc 319
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tcttatgtggcagaacttaactgtgtgtattctagatgcttccaagaattgcttgtgctc 519

                                                                       
Query: 320 taacctggccattgatattctttctgaatcaaatcagtgctggtagctgacgtttgtgct 379
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 520 taacctggccattgatattctttctgaatcaaatcagtgctggtagctgatgtttgtgct 579

                                                                       
Query: 380 ttcctgctcttctttaagtggggcacaggaaaaggaaggactgttcatagcagtgttcat 439
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 580 ttcctgctcttctttaagtggggtacaggaaaaggaaggactgttcatagcagtgttcat 639

                         
Query: 440 ctgcctgggctctg 453
           ||||||||||||||
Sbjct: 640 ctgcctgggctctg 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)