BAC Information

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BAC

Clone NameMSMg01-101H15
Chromosome9 (Build37)
Map Location 115,672,953 - 115,673,198
singlet/doubletsinglet
Overlap genenone
Upstream geneCmtm7, Cmtm8, Gpd1l, LOC100043813, Osbpl10, LOC100043812, Stt3b, LOC100039567, LOC670467, EG546164
Downstream geneGadl1, EG668829, Tgfbr2, LOC100043817, LOC100043819, D730003K21Rik, Rbms3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101H15.T7 (MSMg01no101_h15.b1)MSMg01-101H15.TJ (MSMg01no101_h15.g1)
ACCAG316880AG316881
length936735
length of high quality
(start - end)
---250 (73 - 322)
definitionCHROMAT_FILE: MSMg01no101_h15.b1 PHD_FILE: MSMg01no101_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:42 2005CHROMAT_FILE: MSMg01no101_h15.g1 PHD_FILE: MSMg01no101_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTCCCCCCTNNCTCTC
ATCATACTCTTTATATCTAAAATATAGTGGTCGTCTATACTACTCACTAT
TCCAAGAGGGATGCCGCGGAATTCCTCTCTTTTCTCATAAATACGCTGGA
ATGTGGAGAACACACAGTTACTGCCAGAACATCTCATCTGTGCCCATTAT
GATATATTTTTAGTTGATCTTTGTTTTACTCAAGTAGAACTCAGAATTGT
AAGTTCATTTCGTTTATCACTTACACTGGTCAACATCACATTACAACTAT
TATACACATAGACATCATATGATAACCGCGTAAAACTCTTAGAGAAAATT
ACTATAACAACTTCGCCCATACACACAACACATACCAAAGCACTGTCCCT
CAATCTTGTTTTGTTTATATTTCAATTAATGATCATTTAATATGTTGACA
TTTTATTATTATAACCCCCACCAAATAAATCTTAGTACTATAAACTAATG
ATTATAACAATTAAAATCCATAATAGCTCTACATTGAAAATAACTTTCTA
CATATTGAAACATAAAAATTACCACTCTAACATTACTTTAACATAAATAT
CACACCGACATATTATATTTACTTATTCTATATATTTCACCCATAATCTC
TTAATCATAGCATCGCTCAGTATCTAAAAAACTCCACCACCCACAACTTA
CCCGTATGCTCCGCAACAATTCACTCAACCATTATACCCCTACGATCCCA
AAGTTATATATCATTTACTTTAGAAATAACTATAAAAAAATAACCATCAA
TCACCACTTCAACTATTATTTACTACACCTCATATTTTTTTATTCAATAA
TCTCTATCTAAAATAATCTTAATCCTCAAATATACTCATTCTAATAAATT
ATATAAATAATATAGAATGAAAAAATTAATAAAATG
ATGCTGTGAGAGGCCTGGCGGCCGCCTGGTTTCAAACATGGGGTGACCTA
TAGAAGGATTTCTGAAATTCCAGCTGACACTCTTAGCTCCGAGGCTTTCT
GTCTGCACCCCGCCCTCTCAGCCCTGTCAGACACAGCACGTTGCTTCCCT
TCCTACAGACACCCGTCAGAAGCATGTTTCCAGCTCTCTAACCCGTGACA
TTTCTAAAATGATGGATGATAATATTCACATGGATCTCACGAGTTGGACT
TGGCCGTATACAGCCCTTCCCCATCTACCAGGGTGGCTGCAATTAAAACG
GACGGTTGCAAGTTTGCATATTTTGACGGCAAGAGGCGGTATTTTAAAAA
TCATAATTGCACTGGGCCCTATTAAGTGTTGAGGCTGAAAGCGAGGCTTA
TCCTTGGCTTATTCTCCCATTCTTGGCTGACATCGCTAGGTTGGCGATCT
TACCATAGGATTACAGTTAATTGGCTTTTTATCTTCCCTAGCTCTGCGAC
CTTGAGGATATCCTTCCAACCTTTACTTCATTGATGTCATGGCTAATGAG
CGGATTAATAGCATCTGCCTCACTATCATATCGATGCCCAGAACGTTTAT
GTGCCCCGCTCTGTCTAGTGCTGGGTCTATCTACTGGCTTAGCTATACAT
TTGGCCACCTTTCCTTTTCTTTAAAACATTGTCCCGTGTGTGCTGTATGT
GCCCTGTGTGCGCATACAATGTCTGCTTTGTGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_h15.g1 MSMg01no101_h15.g1 CHROMAT_FILE:
MSMg01no101_h15.g1 PHD_FILE: MSMg01no101_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:42 2005
         (250 letters)



>mm_chr9_115672753_115673402
          Length = 650

 Score =  445 bits (230), Expect = e-129
 Identities = 242/246 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctgacactcttagctccgaggctttctgtctgcaccccgccctctcagccctgtcagac 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctgacactcttagctccgagtctttctgtctgcaccccgccctctcagccctgtcagac 260

                                                                       
Query: 61  acagcacgttgcttcccttcctacagacacccgtcagaagcatgtttccagctctctaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagcacgttgcttcccttcctacagacacccgtcagaagcatgtttccagctctctaac 320

                                                                       
Query: 121 ccgtgacatttctaaaatgatggatgataatattcacatggatctcacgagttggacttg 180
           |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 ccgtgacattcctaaaatgatggatgataatattcatatggatctcacgagttggacttg 380

                                                                       
Query: 181 gccgtatacagcccttccccatctaccagggtggctgcaattaaaacggacggttgcaag 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccgtagacagcccttccccatctaccagggtggctgcaattaaaacggacggttgcaag 440

                 
Query: 241 tttgca 246
           ||||||
Sbjct: 441 tttgca 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)