Query= MSMg01no101_j21.b1 MSMg01no101_j21.b1 CHROMAT_FILE:
MSMg01no101_j21.b1 PHD_FILE: MSMg01no101_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:53 2005
(285 letters)
>mm_chr9_10886201_10886885
Length = 685
Score = 495 bits (256), Expect = e-144
Identities = 276/286 (96%), Gaps = 8/286 (2%)
Strand = Plus / Minus
Query: 1 tcatacaaatatcattaggtggattactaaatatgaaatagatacaaattgactcattag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tcatacaaatatcattaggtggattactaaatatgaaatagatacaaattgactcattag 384
Query: 61 gataggtactatttgtgttttattgcctccttaataagttataatgcctgtgtggggcta 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 383 gataggtactatttgtgttttattgcctccttaataagttataatgcctgggtggggcta 324
Query: 121 acgttttcaactctagggtaacacctgtcctgcaaattcagcttgacatagcagcgtcca 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acgttttgaactctagggtaacacctgtcctgcaaattcagcttgacatagcagcgtcca 264
Query: 181 actaaaagccgttcctctaaaacactgtatctgttagtagcaaacccaaacataattcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 actaaaagccgttcctctaaaacactgtatctgttagtagcaaacccaaacataattcaa 204
Query: 241 taa-atatttttttgatttacttgcatcctgagctcaggtctccac 285
||| | | |||||||||||||||||||||||||||||||||
Sbjct: 203 taaca-a------tgatttacttgcatcctgagctcaggtctccac 165
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no101_j21.g1 MSMg01no101_j21.g1 CHROMAT_FILE:
MSMg01no101_j21.g1 PHD_FILE: MSMg01no101_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:54 2005
(555 letters)
>mm_chr9_10748896_10749852
Length = 957
Score = 864 bits (447), Expect = 0.0
Identities = 527/555 (94%), Gaps = 6/555 (1%)
Strand = Plus / Plus
Query: 5 aattccaatgaactgagaagtctgggctcagaagt-gatgtttattctattaacaaggga 63
||||||||||||||||||||||||||||||||| | || |||| ||||||||||||||||
Sbjct: 205 aattccaatgaactgagaagtctgggctcagaaatagaagtttgttctattaacaaggga 264
Query: 64 cagtaaaattacatgatatctttcacataaacacaaacatttgaaaagttctttggtgat 123
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 265 cagtaaaattacatgatatctttcacataaacacaagcatttgaaaacttctttggtgat 324
Query: 124 tctttaaataattttagccttctaacctgtgcactgcttcttaaaaaatatgtcccactg 183
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 325 tctttaaataattttagccttctaacctgtgcactgtttcttaaaaaatatgccccactg 384
Query: 184 aagggttgtacactacttataatttataatctgtgaaggaaatagaaaatagt-aaaaga 242
|||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
Sbjct: 385 aaggattgtacactacttaaaatttataatctgtgaaggaaatagaaaatagtaaaaaaa 444
Query: 243 aatgaatgtaaactatatttaagataccacatcttaaaagatgtacacactaattcatct 302
||||||||||||| |||||||||| || ||||||||||||||||||||| |||||||||
Sbjct: 445 aatgaatgtaaaccatatttaagaaactacatcttaaaagatgtacacaataattcatcc 504
Query: 303 tatatattatagcgcaaatgatatttatttgccacttgcatctgtaaaggcagtttggga 362
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 505 tatatattatagtgcaaatgatatctatttgccacttgcatctgtaaaggcagtttggaa 564
Query: 363 atgcattcttattatagagactcttctgagtgaaaatccaggaatccatcattgaagaag 422
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atgcattcttattgtagagactcttctgagtgaaaatccaggaatccatcattgaagaag 624
Query: 423 agtggtaaaaatggacctttgaggaatcatcttctttgtcccaaatgctaagtgcctagt 482
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aatggtaaaaattgacctttgaggaatcatcttctttgtcccaaatgctaagtgcctagt 684
Query: 483 gtataattatcaatcatatatagatgtggtctatatataacaataaggcaagcagac--c 540
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct: 685 gtataattatcaatcatatatagatgtggtctatatataacaataaggcaag--gtctgc 742
Query: 541 ttgccttattgttag 555
|||||||||||||||
Sbjct: 743 ttgccttattgttag 757
Score = 68.4 bits (35), Expect = 1e-15
Identities = 35/35 (100%)
Strand = Plus / Minus
Query: 520 taacaataaggcaagcagaccttgccttattgtta 554
|||||||||||||||||||||||||||||||||||
Sbjct: 756 taacaataaggcaagcagaccttgccttattgtta 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 555
Length of database: 957
Length adjustment: 10
Effective length of query: 545
Effective length of database: 947
Effective search space: 516115
Effective search space used: 516115
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
