BAC Information

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BAC

Clone NameMSMg01-101M09
Chromosome9 (Build37)
Map Location 28,753,381 - 28,753,704
singlet/doubletsinglet
Overlap genenone
Upstream geneOpcml
Downstream geneHnt, LOC625222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101M09.T7 (MSMg01no101_m09.b1)MSMg01-101M09.TJ (MSMg01no101_m09.g1)
ACCAG317098AG317099
length717838
length of high quality
(start - end)
322 (373 - 694)---
definitionCHROMAT_FILE: MSMg01no101_m09.b1 PHD_FILE: MSMg01no101_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:07 2005CHROMAT_FILE: MSMg01no101_m09.g1 PHD_FILE: MSMg01no101_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATAATTTGCGGCGCTATACGACTCCTATTCGGAGAGATCCGCGGAATCA
GTCTATGCTATAGCAGAAACATACATGAGTCTGTTCTCCAGGAGCTGTAA
AACATGGGTACAGAAACCAAAGACTTGGAATTGTAAGAGGTCTTCTTTTC
ATCACACCCTGTTTCCCAAACTTCGCACTTTTTGTGCCCTCAATTTTAAG
AATTCCAATTTCAGAGGGTATGAAGAAGTACGGAATTTTGCCAGAGTAAG
TCCAGTGTCCCACTGAATAAGGTGCAATGGTCACCCTGTTAATTTGAGTT
CCTCATGTGAGTGTTTACACAGGAAAGAAGTTAATAGCTATGTTTGAGTT
AATTGGCCTTGCTTCCATGACGAACTAGAGTTGGTTCTACATAATAAAGA
CAAATGAGTTGGCAACTTCATTGAGATATTACTTGGAATTCCCATGCTTG
ATAACAACTGTTAATGAGCAATTAAAAAAAAAACCCACAACCCAACGAGT
GTAAGAAAACTAATGACTTCCATGCCAGGGGCAACAGAGTCTGGATCATT
CTCCCATACACTCAACCCTGGCCAGGTTAGGGTATGTCTATGTGTCATGG
TGGATATTTGTTGGGAAAGGAAAATAAGAACATCATCTGTAGGCGTGGGA
GCAGCTACTTGGTAGCTTCTCTGCATCAGTCATCTCGTTTTGTAGCCTCA
AGGGCCTTTCCTCAAGA
TCTCATACCTTTTCGTCCCTCCTTTATTCTATGGACAACCAGACCCNCCG
CTTTGTTTCTTTACCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTCTAGGT
TTACAAGACTTAGAAACAAAAGGAGTTAAAAACTCTTTTCTGATTCAGAA
CACAGCTTCTGATATCCTTTTATTAATTTGAAAATACAATTACAGAGCAG
GCAACTTGTAAACCATGGTTGCTAGAAAGAGGGAGATAATTAATAGGAAG
AAAGACTGCTGCTCCTTTTGATGCAAAATTCATGAGAAGAAGGTAGGCTT
AACAACAGATATCATCAAGCATTTGTAGTTCCACAGGGGTCTTCTGTTAA
ATAGCGAGCAAGCCCGAAATGTATGGCAAAGTATGATTTGCCCTTTGGCC
AGAATCTGAAAATAAATGGACAAAATTTAATAATATCCTTTTTAGAGTTT
GAACACATAACTGCGGGAAGGCTTAAAAATAATTAACGCTGGTAATAAGG
ACTATAAGCAGCCATATTCAATAAAGGTTTTGTAGAAGAATTTGAAACGT
ACCACCCCGTCCTAAATTACTCCTCCCCCCCCTCCTCATCATGTTGTCAA
AGCTAAAACACCCTCTCCAGTAATGTAAAGACCAGAAGGTAAAATAGAGA
TTAAAATGAATGTCAAATGCACCATCATATTTAAACTCCTGGCGACTAGC
GGTCTCTAACCTTGCTAATGTATCTAATCTTTAATGGATTATGTCTTAAA
GTAATGTTCCCCCACCCTGTGTAGATATCTCCAACTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_m09.b1 MSMg01no101_m09.b1 CHROMAT_FILE:
MSMg01no101_m09.b1 PHD_FILE: MSMg01no101_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:07 2005
         (322 letters)



>mm_chr9_28753181_28753904
          Length = 724

 Score =  615 bits (318), Expect = e-180
 Identities = 322/324 (99%), Gaps = 2/324 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactagagttggttctacataataaagacaaatgagttggcaacttcattgagatattac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 aactagagttggttctacataataaagacaaatgagttggcaacttcattgagatattac 465

                                                                       
Query: 61  ttggaattcccatgcttgataacaactgttaatgagcaatt--aaaaaaaaaacccacaa 118
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 464 ttggaattcccatgcttgataacaactgttaatgagcaattaaaaaaaaaaaacccacaa 405

                                                                       
Query: 119 cccaacgagtgtaagaaaactaatgacttccatgccaggggcaacagagtctggatcatt 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 cccaacgagtgtaagaaaactaatgacttccatgccaggggcaacagagtctggatcatt 345

                                                                       
Query: 179 ctcccatacactcaaccctggccaggttagggtatgtctatgtgtcatggtggatatttg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ctcccatacactcaaccctggccaggttagggtatgtctatgtgtcatggtggatatttg 285

                                                                       
Query: 239 ttgggaaaggaaaataagaacatcatctgtaggcgtgggagcagctacttggtagcttct 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ttgggaaaggaaaataagaacatcatctgtaggcgtgggagcagctacttggtagcttct 225

                                   
Query: 299 ctgcatcagtcatctcgttttgta 322
           ||||||||||||||||||||||||
Sbjct: 224 ctgcatcagtcatctcgttttgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 724
Length adjustment: 9
Effective length of query: 313
Effective length of database: 715
Effective search space:   223795
Effective search space used:   223795
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)