BAC Information

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BAC

Clone NameMSMg01-101N11
Chromosome9 (Build37)
Map Location 27,973,727 - 27,973,964
singlet/doubletsinglet
Overlap geneOpcml
Upstream geneIgsf9b, Spata19, LOC666440, LOC100041202
Downstream geneHnt, LOC625222
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101N11.T7 (MSMg01no101_n11.b1)MSMg01-101N11.TJ (MSMg01no101_n11.g1)
ACCAG317146AG317147
length820736
length of high quality
(start - end)
59 (133 - 191)238 (75 - 312)
definitionCHROMAT_FILE: MSMg01no101_n11.b1 PHD_FILE: MSMg01no101_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:12 2005CHROMAT_FILE: MSMg01no101_n11.g1 PHD_FILE: MSMg01no101_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCCTCTTTTCCCTATTATTC
TTTTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATGAGGAGC
CGCGGAATTCAAAAATTTTTCTCNAAAAGAGACTTATTCTCTCTGTGTCC
TCCACATACCTCTGAGATATACATATTCCCTAATCAGCTCTGGTTTAGAT
TTTATAATATGTTTTGATAAAAGGAATATATTCCAACTAAGAACATATGA
GGTAGACACAATATATTCTTATGAATTCCTATACCTTCTAGACTGTCTGT
TTATTTCTTTGTTTCCCCACAGCTAATTTTTTTCTTCCATTTTCTGCTAT
ACTTTTCATATAATTAGGAACGACTATTTTTTTTTTTGTGATAGATTTCC
ATCTCACAAACAAAATATTTTTTTTTTCGCCCCCCCCCCCCTTCTTTTTT
TTTTTTGTGTTCTGACTGTTACATAATATTTTTAATTTCTTTTCTTGTAG
TAATATATAATAAATCCTAATCACCATTCTTTTTATGATCAACTGCTCCA
TATATTTTCTATATAATTAATCTAATTCAAATCTGAATATTACACATCAT
GCCTTTCATATTTGCTTATCCTGGTTCGTGTCATCCCACCCTGCTTCGTA
CTCTGTTGTTTCTCTTTTCTCCTACTTCTTTGTTCTTTTTCTTATTTTTG
CATGCATCCGATCTTTCAATCTTATTTTTTTCTTTTATTTATTCTTTTTT
TTCATCTTTATACACTCATCTTTCCTTTATTAATTTAATTTTTTCATATT
CTCTTATCTTCATTCTTACA
TCGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTGTTCTGCAAAATTCTCAGTGTGTCTATAAACCAAAAAGGTC
TAACCCTGATGAAATACATATCCCCTCCTACGCAGGGGAGAATTCACTCT
CTTTTTTCTTACATTGTATTTAGCATGGGGTCTTAGTGAAAAAAATAATT
GCAGGGTAGTCTTGATGAAATAACCTGGCACAAGATAGCAATTAGTTCTT
CAGATGTGGACCAGCTTCAGGTTAGAGAACCTGCCTTGTTCCTCTAGCAA
CACATGGAAGGTAATACTCTTTTTTTTATCTCTCTATCAGAGCACCCAAG
ATGACCAAGTCTTGACCAGCCCACGCCTATTTTTGTCTCATGGTGCACAT
TGCAGACTCTGAACAGCTGATCCTGCTGCTTTGTAGCCTTTGAGCCTGTG
ACATCATGACAGGTACCCTTGCAAGAAAGTAAATCCTGTTTACCACTCTT
TTCAAAAAGCAAGAGTCACAGTGCGAAGTATGCAGTTTGTGATCTCAGTC
CTTTTTTAAGAGAACAGAACAGAGCAGGGTTCCTGTCACCTACCCCTTTT
TCTTTTCCTCCATCTCTGAGTCTTGCTCCTTCCTAACCTACTCCCCCTTA
TCTTGGGCCTCTGTGTTCTTATCGCTTACACCTTTTTAATACATGGCTAA
TGGCTTGTGCGTCTTTAGCTCTCATGTGTCTTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_n11.g1 MSMg01no101_n11.g1 CHROMAT_FILE:
MSMg01no101_n11.g1 PHD_FILE: MSMg01no101_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:13 2005
         (238 letters)



>mm_chr9_27973527_27974164
          Length = 638

 Score =  445 bits (230), Expect = e-129
 Identities = 236/238 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtgtgtctataaaccaaaaaggtctaaccctgatgaaatacatatcccctcctacgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 cagtgtgtctataaaccaaaaaggtctaaccctgatgaaatacatattccctcctacgca 260

                                                                       
Query: 61  ggggagaattcactctcttttttcttacattgtatttagcatggggtcttagtgaaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggagaattcactctcttttttcttacattgtatttagcatggggtcttagtgaaaaaa 320

                                                                       
Query: 121 ataattgcagggtagtcttgatgaaataacctggcacaagatagcaattagttcttcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataattgcagggtagtcttgatgaaataacctggcacaagatagcaattagttcttcaga 380

                                                                     
Query: 181 tgtggaccagcttcaggttagagaacctgccttgttcctctagcaacacatggaaggt 238
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 tgtggaccagcttcaggttagagaacctgccttgttcctctagcaacacaaggaaggt 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)