BAC Information

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BAC

Clone NameMSMg01-102F11
Chromosome9 (Build37)
Map Location 80,057,129 - 80,195,873
singlet/doubletdoublet
Overlap geneMyo6, Impg1
Upstream geneLOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a, Filip1, LOC100041218, LOC666490, Senp6, LOC100041249
Downstream geneEG666534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102F11.T7 (MSMg01no102_f11.b1)MSMg01-102F11.TJ (MSMg01no102_f11.g1)
ACCAG317513AG317514
length690774
length of high quality
(start - end)
447 (65 - 511)232 (147 - 378)
definitionCHROMAT_FILE: MSMg01no102_f11.b1 PHD_FILE: MSMg01no102_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:54 2005CHROMAT_FILE: MSMg01no102_f11.g1 PHD_FILE: MSMg01no102_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,195,455 - 80,195,873)(80,057,129 - 80,057,360)
sequence
CATAATTTGCGGCGCTATACGACTCCTATTTCGAGAGGACCGCGGAATTC
CAAAATCTACCCACTGACAGACTGGATCCCTGGTGACGGTGCTTCTCCTG
GGTTGCTCATGGATGCCTTCTAGAGTCTCTCATATCTGTTCAGATGAGGG
CACTAATACCAGTATCATCCAACAAGGGCTCTCTTCTCACAACATGCCTA
TCTCCCTATGGCCTCATCTCCAAATGTTATTATTTTGTGGGATAAGAGTT
GTCCACATGAATTTGGGAGGTATAGAAGCATTCAGCTCATAGGAAATGAA
GATTTGGATAAAAATCTCAGCTTATATGCACAGAGAGCATAGATGTCAGC
AAATATTATTTCTGGCAGTTGACTGAATTATGATTAGACACATCTAGGAA
CTTTGTGCTGGGGTCGACAAGGGTCCGCCCCTGAAATGGAAGCATAACTC
AACCAATAGCAAGGTTTTATTTTAAGAAAGTAATGAAGCTGATATGATTC
TGCCTCTCACAGCTGCTTAGAACTTGCAGTTTCAGCTTTGGTGATCGCAC
TGTGGTAACTTATTTGACTGCAAGTCCAAACATGTTATCTACGCTCAGAC
AGACCATTCATCATACTTATCATGCTGGTTTCAGCAAAACTTTTTCCCGC
ATCTGTCCAAATGCCCTCGGAAGCAATCATAAAAATTGCC
NNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCNNNNCC
CTACATACATAANTTTCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTC
ATCCTTGAGCAACACACTCTCCACCCTCTGAGCTATGTCCTCAGTCCCTT
TTAATATGTTCTATAAGCCGTCAATGTATAAATCAGTGCTCCCCTGGGTC
ATGTGAGCTGCTTAAGCAGGTAATTGAACATGAGGGTGCTTTGGGGAATG
CCGGATTACAGCCAGAATGTTGGGAACACCGTCTAAACAATCTAGGACAA
ATGGCGTCTAAAGTGTCCATGCTGTGCCGTGTGACTCTAGGCAGTAAAGG
GAACTGGTGGGTACCCATCTGTTGTCCAGCGCCACAGAATCGATAGCCCC
GCTGGTTAGTGGTGTGAAGTCTCTGCACCTTTTTTAGGTCACTGGAGCCT
TTTGTGTGATGCAAGAATAGAGGAGAAAAACAAGTGTAACCATTGCCACC
CGATGGAGTCAGTGAATCCAGAGGTAGAGTGACTGGCAAAGAAAGAGCTT
TATTGATAACAAGCTGCCTGTTGGAAGATATCAGTGCTCTTGTCTTCGAG
GGACCACCTTACCCCTTGCCCCGATGTAGATAGTTTTATACGGACCTGCA
GGGGTTTGGAGTCCTTGACAGATGGAATGCCTCAAATGTCCATTGTACTC
CAACAAAGACTCTGAAAACAGGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_f11.b1 MSMg01no102_f11.b1 CHROMAT_FILE:
MSMg01no102_f11.b1 PHD_FILE: MSMg01no102_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:54 2005
         (447 letters)



>mm_chr9_80195027_80195873
          Length = 847

 Score =  764 bits (395), Expect = 0.0
 Identities = 413/419 (98%)
 Strand = Plus / Minus

                                                                       
Query: 27  gcttctcctgggttgctcatggatgccttctagagtctctcatatctgttcagatgaggg 86
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 gcttctcctgggttgctcatggatgccttctagagtctctcatatctgttcagatgaggg 788

                                                                       
Query: 87  cactaataccagtatcatccaacaagggctctcttctcacaacatgcctatctccctatg 146
           |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 787 cactaataccagtaccatccaacaagggctctcctctcacaacatgcctatctccctatg 728

                                                                       
Query: 147 gcctcatctccaaatgttattattttgtgggataagagttgtccacatgaatttgggagg 206
           ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 727 gcctcatctccaaatgttattatattgtgggataagagttctccacatgaatttgggagg 668

                                                                       
Query: 207 tatagaagcattcagctcataggaaatgaagatttggataaaaatctcagcttatatgca 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tatagaagcattcagctcataggaaatgaagatttggataaaaatctcagcttatatgca 608

                                                                       
Query: 267 cagagagcatagatgtcagcaaatattatttctggcagttgactgaattatgattagaca 326
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 607 cagagagcatagatgtcagcaaatattatttctggcagttgaccgaattatgattagaca 548

                                                                       
Query: 327 catctaggaactttgtgctggggtcgacaagggtccgcccctgaaatggaagcataactc 386
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 cacctaggaactttgtgctggggtcgacaagggtccgcccctgaaatggaagcataactc 488

                                                                      
Query: 387 aaccaatagcaaggttttattttaagaaagtaatgaagctgatatgattctgcctctca 445
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 aaccaatagcaaggttttattttaagaaagtaatgaagctgatatgattctgcctctca 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no102_f11.g1 MSMg01no102_f11.g1 CHROMAT_FILE:
MSMg01no102_f11.g1 PHD_FILE: MSMg01no102_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:54 2005
         (232 letters)



>mm_chr9_80056929_80057560
          Length = 632

 Score =  426 bits (220), Expect = e-124
 Identities = 229/232 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcatccttgagcaacacactctccaccctctgagctatgtcctcagtcccttttaata 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 attcatccttgagcaacacactctccaccctctgagctatgtcctcagccccttttaata 260

                                                                       
Query: 61  tgttctataagccgtcaatgtataaatcagtgctcccctgggtcatgtgagctgcttaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttctataagccgtcaatgtataaatcagtgctcccctgggtcatgtgagctgcttaag 320

                                                                       
Query: 121 caggtaattgaacatgagggtgctttggggaatgccggattacagccagaatgttgggaa 180
           ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 cagataattgaacatgagggtgctttggggaacgccggattacagccagaatgttgggaa 380

                                                               
Query: 181 caccgtctaaacaatctaggacaaatggcgtctaaagtgtccatgctgtgcc 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caccgtctaaacaatctaggacaaatggcgtctaaagtgtccatgctgtgcc 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)