BAC Information

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BAC

Clone NameMSMg01-103D07
Chromosome9 (Build37)
Map Location 73,801,023 - 73,801,276
singlet/doubletsinglet
Overlap genenone
Upstream geneDyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081, Unc13c
Downstream geneWdr72, Nr1h2-ps, LOC100040764, Onecut1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103D07.T7 (MSMg01no103_d07.b1)MSMg01-103D07.TJ (MSMg01no103_d07.g1)
ACCAG318135AG318136
length711715
length of high quality
(start - end)
---255 (73 - 327)
definitionCHROMAT_FILE: MSMg01no103_d07.b1 PHD_FILE: MSMg01no103_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:03 2005CHROMAT_FILE: MSMg01no103_d07.g1 PHD_FILE: MSMg01no103_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCATTACTATTCTATATTTCTAGTCCATTAGCATGTATA
GCTTTGTATATGCCTGTCATCTGGAAATTCATTAAGTGGCCGTCAGATAT
GGCTATCACAACACAGACAAGTAGCTGTTTGTCTTTAAACAGATACTTGA
CAGAACAGCCTTATCTAAAGGAAACAGGAGTGCATTCTAGTAGCATTATA
CTTGTCAAAGACTATTTATTATGCTTCTGTTACAACCCACGCATCATAAC
AGGCGTAGGAACACAGTCATTAAAATACTTTTATTTGGTCCTCGCTGATA
GAAAAATTGCAACCTTGTGTTACAACAGACGCCCCCCACGCTATCACCAA
AAACATACAGAGTGAATCTGTGAACTGCTTCCCCGAGAAAAAGTGCCAGC
TGCTGATATTGCCCACGCAACCCGATATTAATTTTCCCTCGCTAGTATAC
GACTCTCATATATAGACCACCACGCTGTGTGTGATGCCTCGCCCGCATTT
CCGCGCGTGCTTTTTTATATTACCCTCATACAGCGCCCCCTACACCGGAC
GACTCTTCTGCACCTGCCCCATGCTATGAGCATGCCACACCGAAAAAATT
GCATTATAGCTCACTGTTCACGCACCCCTTTTTACTCTCCTATCCCCTTC
CACTTCCACTA
AATGAAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTTGTATCTTAGAGAATTCAGAGGAAG
TAACGAGGTCAAAGTTATTAAATTGGACTGAACTCTCTATAATTACAGCT
GCCCTCAAGTCTAGGAAATTGAAATAAATTAACACAGATGTTTTCTCCCA
TGACTAAGAACCCAATGGTAGGATGGCCAACCTGCTCAAGATGGGAATTA
AACCTTACCTGAAGTCTTCTCTTTCATAACGACAAATTCTTCTACTGGGT
GCTTAGCTTTTCCAGTATCTGTTACATGAAATGATAACTTATTTGCTCGG
TGACATAGATAGTTTTATAACTACCCTTTAATTAGTAAGAAATTGCTTCT
AGCTAATCATTGTCTTTCTGCCCTGTATCAAGAGATTCCAACAATAGTCC
TTCTATCTCACAGTGCCAATCATTTCTTCCCTTGATACTCTCACATATTC
AAGACACTATGTGTGCTGCTTCCTTCCTACTGATATAACTTTGAACTTTA
TAGCTATAAGAATGGTAATTTTGACTCACTGATATACTACAGGGCCTGTT
TTTGCAAAGCATCACCTGATTAGATCTATCTATCTATCTATCTATCTATC
TATCTATCTACCTATCTATCTATCTATCCATCTATCCACCTATCCATCTA
CCCATGCGCATGCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_d07.g1 MSMg01no103_d07.g1 CHROMAT_FILE:
MSMg01no103_d07.g1 PHD_FILE: MSMg01no103_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:03 2005
         (255 letters)



>mm_chr9_73800823_73801477
          Length = 655

 Score =  460 bits (238), Expect = e-134
 Identities = 250/254 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttgtatcttagagaattcagaggaagtaacgaggtcaaagttattaaattggactgaa 60
           ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 454 ttttgtatcttagagaattcagaggaaataactaggtcaaagttattaaattggactgaa 395

                                                                       
Query: 61  ctctctataattacagctgccctcaagtctaggaaattgaaataaattaacacagatgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ctctctataattacagctgccctcaagtctaggaaattgaaataaattaacacagatgtt 335

                                                                       
Query: 121 ttctcccatgactaagaacccaatggtaggatggccaacctgctcaagatgggaattaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ttctcccatgactaagaacccaatggtaggatggccaacctgctcaagatgggaattaaa 275

                                                                       
Query: 181 ccttacctgaagtcttctctttcataacgacaaattcttctactgggtgcttagcttttc 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 274 ccttacctgaagtcttctctttcataacgacaaattcttctacggggtgcttagcttttc 215

                         
Query: 241 cagtatctgttaca 254
           ||||||||| ||||
Sbjct: 214 cagtatctgctaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 655
Length adjustment: 9
Effective length of query: 246
Effective length of database: 646
Effective search space:   158916
Effective search space used:   158916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)