BAC Information

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BAC

Clone NameMSMg01-104C15
Chromosome9 (Build37)
Map Location 57,377,163 - 57,377,453
singlet/doubletsinglet
Overlap geneCox5a
Upstream geneLOC640537, Lingo1, Odf3l1, Cspg4, Sh3px3, Imp3, Snupn, Ptpn9, 2700012I20Rik, Sin3a, Man2c1, Neil1, Commd4, 1700041C23Rik, Trcg1, 1700017B05Rik, EG330948, Ppcdc, Scamp5, D9Wsu149, LOC620603, Rpp25
Downstream gene2310046O06Rik, Mpi1, Scamp2, Ulk3, Cplx3, Lman1l, Csk, Cyp1a2, Cyp1a1, Edc3, Clk3, Arid3b, LOC665235, LOC677423, LOC100039509, Ubl7, Sema7a, Cyp11a1, 4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik, Cd276
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104C15.T7 (MSMg01no104_c15.b1)MSMg01-104C15.TJ (MSMg01no104_c15.g1)
ACCAG318844AG318845
length718717
length of high quality
(start - end)
291 (70 - 360)536 (71 - 606)
definitionCHROMAT_FILE: MSMg01no104_c15.b1 PHD_FILE: MSMg01no104_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:19 2005CHROMAT_FILE: MSMg01no104_c15.g1 PHD_FILE: MSMg01no104_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAATCCGCGGAATTC
CACAGCTGCTTCCGATATGACCATTACATTCTGGCAGAGAAGTTAAAAGC
ACTTGGGATGCTTGCTTTTATTATTGTAAAATATTTAAAGAATACATTGG
AGAACCAACCATACCCACAGCCACATTGCCACAGATTCTTGATCTGAGAT
TATATAGTACACTTACAATTAATGACTGGTTAACATTAGTGCTATTTGTT
CCTGCTCAAATGACTGCTCATCTAAATGATCTGAAAGACACAGTAGTAGT
AACTCTGCTGTTAAACCAGCGCATAGAACAGCCTCTCAACAGAGCTCTCT
GGCTCACATGTCCATACGGCACGTGTTCCCTCTTTCTTCCCAGTCCTGGG
GATCAGACCCAACCCCTATGTATGCAAATAAGGATCTCTATCACTGACTA
GTATACTCCAGATCTGCTGTCTAGTTTAAAACTCACACCTTATACGACAC
ATTATACAAGTTGCACGCTTTTCTTACTACTATTTGCGACAGTCACCATC
TCTCACAACATGCCTTTCAAATTTACATTGCGTTCAGCTTTTAACATTAT
CCCCTGATTCATCCATGCCCATACGATCCATCTATGCTCAAATTAACTTT
ATACTCCTTTCATGCCTTCATGCCTGGCCTGTTGAAATAATGCACCCCAG
CGAGTATTAAAATCCTTT
ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTGCAGGAGAATGTGTAGAAGGCAAAATAA
CTAAAATACAACCCATGTTTGGAATCCAATGATTTACATTTGCATCTTGT
AATTTATTTTCTACCAGAGCCAATTCTCTCTCAGCCTCAGCTAATAATTT
TCTTGGACTGTTAAGTCTTTATCACCTTGTAAAGTTTGAAATAAATTACT
TAGCTCTTGAGTAGTTAATCTAATTATGGGTCTTAGCCAATTAATGTCTT
CCAACAATTTTTGAAAATCATTAAGAGTTCTTATTTGGTTTCTCATGATT
TGTACTTTCTGTGGTCAAATTTTCTGTAGATTTATCTTATATCCTAGATA
ATTAAAAGAATCTCCTCTTTGTATTTTTTTTTCCAGGAACAATTTGTAAT
CCCCCAACAAAGCAAAATTCTCTTCACCAAACATTTTGCTAAGGTAGCGC
CATTTGAATATCATCCATATCAAAATATCATCCATATAATGGTAAATAAT
TAATTGAGGAAGTTTTTTATTAATTATTTCTAACATGTATTGTACAAAAG
ATTGGCATAATGTACGACTGTTTAATATTCCTTGCAGGAGCCCTTTCCAA
TGATATCTTTTTGTTGGCATGGAGTGGTTAAATGTGCGCACAGTAAAAGT
AAATCTTTCTCTATCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_c15.b1 MSMg01no104_c15.b1 CHROMAT_FILE:
MSMg01no104_c15.b1 PHD_FILE: MSMg01no104_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:19 2005
         (291 letters)



>mm_chr9_57376963_57377653
          Length = 691

 Score =  547 bits (283), Expect = e-160
 Identities = 289/291 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accattacattctggcagagaagttaaaagcacttgggatgcttgcttttattattgtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 accattacattctggcagagaagttaaaagcacttgggatgcttgcttttattattgtaa 432

                                                                       
Query: 61  aatatttaaagaatacattggagaaccaaccatacccacagccacattgccacagattct 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 actatttaaagaatacattggagaaccaaccatacccacagccacattgccacagattct 372

                                                                       
Query: 121 tgatctgagattatatagtacacttacaattaatgactggttaacattagtgctatttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tgatctgagattatatagtacacttacaattaatgactggttaacattagtgctatttgt 312

                                                                       
Query: 181 tcctgctcaaatgactgctcatctaaatgatctgaaagacacagtagtagtaactctgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tcctgctcaaatgactgctcatctaaatgatctgaaagacacagtagtagtaactctgct 252

                                                              
Query: 241 gttaaaccagcgcatagaacagcctctcaacagagctctctggctcacatg 291
           |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 251 gttaaaccagcgcagagaacagcctctcaacagagctctctggctcacatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)