BAC Information

Click to search

BAC

Clone NameMSMg01-105D13
Chromosome9 (Build37)
Map Location 31,491,320 - 31,491,725
singlet/doubletsinglet
Overlap geneEG666576
Upstream geneAdamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558
Downstream geneBarx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622, Grit, Kcnj5, Kcnj1, Fli1, LOC669759, LOC100041398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105D13.T7 (MSMg01no105_d13.b1)MSMg01-105D13.TJ (MSMg01no105_d13.g1)
ACCAG319634AG319635
length718714
length of high quality
(start - end)
405 (79 - 483)367 (75 - 441)
definitionCHROMAT_FILE: MSMg01no105_d13.b1 PHD_FILE: MSMg01no105_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:47 2005CHROMAT_FILE: MSMg01no105_d13.g1 PHD_FILE: MSMg01no105_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTGATAATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTAGTTGTCCACTAAGGCGTTTGAAGGCTGTTGGCCT
CATCTTCCTCTGCCTCTCACATTCGCAGCTTTATGGGTTACTCCTCAAAC
TCCTTCTCCTCAGCAGTAAAGTGCCCCCCTCCCCTCCGGCTGTGCCACTC
TACTGAGAGGACAAAAGGGACCATGTGGTCAAGGAAACCTTGAAAGTGCT
GGCTGATCCAGAAGATATGGGTGGCCTGCTAGGGAGATGCCCAAAATTGA
CTTGCAAGAAGTTAAACCAAGAAGGAAATGAGCCTGCTGACCTCTGCAGC
CTAGCATTAGGGAATGCATTTGTAAGCAGAAGAGCGGTTGCTAGGCTCGG
GGATAAACAAACAACCCAGTGAAAATGATTTGGGAAGAAGGAACATCTAA
TCAATCAGCCCTGAGGGACAGCAGCGATGTCTTACTGTGCTCCTTTGCCT
GGTTTCAGGCCACCGAGTCCAAGTTTCTGTCACAGACTCGGGCTTCCAAA
GAGCTCGGTAATTGTTTTCCACCTGCGCCTTGACCAAACCACTGCCCGGC
GTACAGGGCCAGAGTGTTTCTCTCTTCAGACCCAGCCCGTAAAGAGAGAA
GGTTGAAAGGTTAGGATCCGGTAGGGAGCCTGTGTAGTCCGTATGCATCG
TCATCCGGCCTGCGCGAG
TCGATGTAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
AAAGCACCTGAAAAAATGTTCAACATCCTTAATCACCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGTTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAAC
ACCCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCC
ACAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAA
GAACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGTCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGATAATG
CGGTACATCTATTCAATGGAGCATTACTCAGCTATTAAAATCAACGAATT
CATGAAATTCCTATCCCAATGCACGCATTCTGGAGGGTATCATCTCTTGA
GTGAGGTAATATATTCACTCCGGAACTCACACAACATGCACCCACTGATA
AGTGCATATTATTCCTAAACTTAGGATTCCCAACATTTAACAATCCCTTT
GCTCACCACTTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_d13.b1 MSMg01no105_d13.b1 CHROMAT_FILE:
MSMg01no105_d13.b1 PHD_FILE: MSMg01no105_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:47 2005
         (405 letters)



>mm_chr9_31491120_31491925
          Length = 806

 Score =  754 bits (390), Expect = 0.0
 Identities = 402/406 (99%), Gaps = 1/406 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcgtttgaaggctgttggcctcatcttcctctgcctctcacattcgcagctttatgggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ggcgtttgaaggctgttggcctcatcttcctctgcctctcacattcgcagctttatgggt 547

                                                                       
Query: 61  tactcctcaaactccttctcctcagcagtaaagtg-cccccctcccctccggctgtgcca 119
           ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 546 tactcctcaaactccttctcctcagcagtaaagtgccccccctcccctcctgctgtgcca 487

                                                                       
Query: 120 ctctactgagaggacaaaagggaccatgtggtcaaggaaaccttgaaagtgctggctgat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctctactgagaggacaaaagggaccatgtggtcaaggaaaccttgaaagtgctggctgat 427

                                                                       
Query: 180 ccagaagatatgggtggcctgctagggagatgcccaaaattgacttgcaagaagttaaac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ccagaagatatgggtggcctgctagggagatgcccaaaattgacttgcaagaagttaaac 367

                                                                       
Query: 240 caagaaggaaatgagcctgctgacctctgcagcctagcattagggaatgcatttgtaagc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 caagaaggaaatgagcctgctgacctctgcagcctagcattagggaatgcatttgtaagc 307

                                                                       
Query: 300 agaagagcggttgctaggctcggggataaacaaacaacccagtgaaaatgatttgggaag 359
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 306 agaagagcggttgctaggctcggggataaacaaacaacccggtgaaaatgatttgggagg 247

                                                         
Query: 360 aaggaacatctaatcaatcagccctgagggacagcagcgatgtctt 405
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aaggaacatctaatcaatcagccctgagggacagcagcgatgtctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 806
Length adjustment: 9
Effective length of query: 396
Effective length of database: 797
Effective search space:   315612
Effective search space used:   315612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)