BAC Information

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BAC

Clone NameMSMg01-106D18
Chromosome9 (Build37)
Map Location 33,416,227 - 33,416,564
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneLOC100042343, Kirrel3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106D18.T7 (MSMg01no106_d18.b1)MSMg01-106D18.TJ (MSMg01no106_d18.g1)
ACCAG320378AG320379
length1,2841,291
length of high quality
(start - end)
338 (134 - 471)261 (132 - 392)
definitionCHROMAT_FILE: MSMg01no106_d18.b1 PHD_FILE: MSMg01no106_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:22 2005CHROMAT_FILE: MSMg01no106_d18.g1 PHD_FILE: MSMg01no106_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCGAAATTATGTNAAAACACTGGGCGCTATAGACTCCTATAGGGAGAG
GATCCGCGGAATTCTGAGGCTGAAAGATTTCCCTTTAAGGTAGGTAACAC
AGGAGATATCAGAAATGAGAACCCTTTGAGAGCTAATAAAGATAAAGGAG
CTAACAATGTGTATTTTCTAGCACTTGGGAGACAGACTCAGGATTATCCT
GGCAATTTCAAGGCTAACCTGATCTACAGAGCAAATTCTAGGGCAGCCAG
GCCTACATAGTATAACTCTGTTTAAAACAAAAAAAGAATATATAGAAATC
TACTATTTTGCAACCCAACTAAAAATATAATCAGAGGGTGTAGTAAAAGA
GTTATTACATGAGAAGAGGGCAGAGATACTGGGAACAGGGAACAGGAAGG
GGAGAAAAGGAAAAGAATTATTACCCTAAACTAAGAATGGGTGGGGGAAG
CTTATGGAAACCAACAAATCTGTATTCCCCTAAAAATTATAATAACAAAA
GGAATTGGAATGGAGGAACTTTGCATGGGTAGACAATAGTATTTTCAGAA
GGAATAAGTTATCAAATCAAAATCCCAGTGCAGAGACCTTTGAAACAACT
CAGGCTGCTTTCTGATTATCCACTATAACTAGAAAAAACTCCACAAACTC
TAGCACATACTTAGGTCATTCAGGAACTGATTGTTAAACTTTATCCCTGC
TAGTTAGCTTATACTATTTAGACAATTTGTTTAGATTATTTCATTGGTTT
TATCCATCCTCAATCCCTTGCATGCTATAATACTTATCCATACAATTATG
ATTGTGCTTTTGTGTGCAATTATATGTTGGTTATGTTTTAATGTAACAAG
TTTTTGTTTGCTTTTGACTTTTTGTCTCTAGGGATATAATTTTTTTCCTG
GTTATTGATAATTTGGTCCATATTATTCCTTGTTGTTGATTAAATTTTAT
TTTTCCCATTATGTTTATAATTTGATTGTTGTTTTTTCTCATAATTAATT
CTTTGCCTAAGGTTTTTTATATATATTTATGTCTTTTCTCCTTTATTATT
TATGTGGGTCTCTTTATATTTTTGACTAAAAACACTTTGTTTATTTTGAT
TTAATTAACCTTCTTGTTGTTAATCTAATTCGATAAACATTATGTCTCTA
ATATCATTTCTGTCGTTTAACGGGTAATTTTCCTATATATTTTCTCTTTG
GTCATTTTTTAATATTTATTGATATAAACCTTTCCTTTTAATTAGTTTNA
TTATTTTCTTAATCTTTTACCTACTTTATATATC
CAGATCTTTTTTNAACCAGGGGAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTTAAGCTTCATATGTTCCTG
GTTGTACAGAATATTTCCCCTTAATGCGACTCCTGAGATTGCATTATTTA
CTGGGAAAAAAAAACTGTTTCTAGTTGTAGTGAGGCTCAGTCCTTGACAC
ATACCTTTAGTCCTTTTGGCCAGAATACAGGCACACCCTCAGAACACACT
AATCCAAAACAATGAAGGTAAATAAAGTTAGTTTGTAGAAGGAAGCACCA
TGTTTGATAGTGATGTCTAGTTGAGTGGCAGACAAAGTGATGAATAAAAG
AAAGATTTGACAGATTAGGATATGCCAAATTCTCACAAAAAGAGACTGGA
AAGGGAAGCTTTTTGAGGGGCATCACCTAAGACTCTGAGACAATAATTAC
TACTAGAGAATATTTGATTCTTTACCCCCAAATTTTTCTCTTCATTTGCA
TTTCACATGCTATCCCCAAAACCCCCATACCCTCCTCCTGTTCTGCTCCA
CAACCCACACACTTCTGCTTCCTGGCCCTGGTATTCCCCTGTTCTGCTGC
ACATGATCTTCTGCATACCAAGGGCGCCTCCTCCCATTGATGTCCAACTA
TGTTATCCTCTTCTTACATATGTCACTAGAGATACTTTTCTGGCTATTAA
TTGCTCTTGTTCTTGTTCCTCTTACTACTATGCTCACCCCCTTATTAATT
TTTCCTTGGTATCTTTCTCTATTTCTCTTTATTATTTTCCTGTGTTCTAT
CTTTATATATGTTTGCTATTCATCCCCTTTTTCTTTTTTCCTTTTTCCTA
CCTTTATTCTTCCTCTTATTAAACCTTTACTTATTGCTCTTTGTTTTCAT
TATTTTTTTCTGTTATTATTTTCTTTTTTTTCTTGTTCTTCTTCTTTATC
TCTCTCTGTTATCCTTATCCTCTATTTTCTTCCTATTTTTTTCTAATTAT
CTATATATTTCCGCCTTATATTTTTTTATATCTTATCTCTATTTACGCTT
CATATCCTAATACTCTTGACCTATTTACTTTCCCTTTTTTGTTATATTCT
CCATTATATTTCATATATATCTCTTCTCTCCATAACCTCTATGTTCCGCC
GTCCCTTATTGTTCTATCTTAATCATTGTCTCTTCTTTTCCACCTGTCAT
TATTTCTATTCCCTGTCATTCTACAATCTCTTCTCTCTCTTTATCGTCGG
CTATATCTCTCTTCTAGCTACTACTACCACTTCTATGCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_d18.b1 MSMg01no106_d18.b1 CHROMAT_FILE:
MSMg01no106_d18.b1 PHD_FILE: MSMg01no106_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:22 2005
         (338 letters)



>mm_chr9_33416027_33416764
          Length = 738

 Score =  615 bits (318), Expect = e-180
 Identities = 333/338 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taataaagataaaggagctaacaatgtgtattttctagcacttgggagacagactcagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taataaagataaaggagctaacaatgtgtattttctagcacttgggagacagactcagga 260

                                                                       
Query: 61  ttatcctggcaatttcaaggctaacctgatctacagagcaaattctagggcagccaggcc 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatcttggcaatttcaaggctaacctgatctacagagcaaattctagggcagccaggcc 320

                                                                       
Query: 121 tacatagtataactctgtttaaaacaaaaaaagaatatatagaaatctactattttgcaa 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacatagtatgactctgtttaaaacaaaaaaagaatatatagaaatctactattttgcaa 380

                                                                       
Query: 181 cccaactaaaaatataatcagagggtgtagtaaaagagttattacatgagaagagggcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccaactaaaaatataatcagagggtgtagtaaaagagttattacatgagaagagggcag 440

                                                                       
Query: 241 agatactgggaacagggaacaggaaggggagaaaaggaaaagaattattaccctaaacta 300
           ||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 441 agatactgggaactgggaacaggaaggggagaaaaggaaaagaaagattaccctaaacta 500

                                                 
Query: 301 agaatgggtgggggaagcttatggaaaccaacaaatct 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaatgggtgggggaagcttatggaaaccaacaaatct 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)