BAC Information

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BAC

Clone NameMSMg01-106I08
Chromosome9 (Build37)
Map Location 25,885,548 - 25,886,064
singlet/doubletsinglet
Overlap genenone
Upstream geneHerpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
Downstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106I08.T7 (MSMg01no106_i08.b1)MSMg01-106I08.TJ (MSMg01no106_i08.g1)
ACCAG320585AG320586
length1,5931,298
length of high quality
(start - end)		---599 (81 - 679)
definitionCHROMAT_FILE: MSMg01no106_i08.b1 PHD_FILE: MSMg01no106_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:05 2005CHROMAT_FILE: MSMg01no106_i08.g1 PHD_FILE: MSMg01no106_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTATAAAGGGTGGTGGTTCCCTCCTCCTCCTCCTCCTCCTCTTTTAAGA
GGTCCTCNATAATCACCTGGTCGATGATAATGGGTGTAGTGATTAATGTG
AGTTGGGATGATAGAGTTGCTTTAAATGATTTGAATGTATTATATTTATA
AAATATTGGAGAGAGGAGTGGTGGAGAAGGGATATTGGTAGTGTTGGGAA
TTAATAGAATTTAAATTGTATGTTTGGTATTGTTAATGAGAATTGTAGAA
GAATTAGTAAATGGGAGTTGGTAAAGTATAGGATAAGTAAGGGGTTGAGT
TTGGAAAATTGAATATGGATGTAATATAGATTGATTATATGGATGAAGGG
AGAAAGAGTAGATGATTGAAAGTGTGTTAGTAATTGTAAAGTGGAATTGT
TTTTTTTTTTTTTAAGAGTAATGATTAAAAAGATAATATTTTGATTATAT
TGGTGAAAGTAAATAATATCATTGTATGATTGTTTAGTAAGAGAGTATAA
ATATATTTAGTATTGGTAGTGTAATTGATAAAAAATATGGGAGTGGTTGG
GTAATTGTTTGAAGAGATTTGTGTTATGTTTTTATGTTAGTAGAATTGAT
TTTATTGGTAATAAAAATTAATGGATTGAGTGTTTGTGATAGAAATGAGA
ATGTTGATATGTTGATGTGATAGAGGTGAAGATAAGAATGTTGATTGATT
GGAGTATAATTATTATTAAAAGAATTATATGAGAATGATGAGAGATAGTT
TAGAATATGTGAATGGAAAAGGTTTAATGTGATATTGTAATGAGATGAAT
GTGGTATAGATTGTATTTGTATATTTATATTAATGGTGTTTGTAATGTGA
AATTATATAGTTATTAGAAATTAGAAGTTGATGTATGTAGAAAGTGTTAA
GATTATAGTATGTTGTGGTTGATTATTAAGTGTTAAGGTATTATGTTTGG
GATAGTTTGGGTTGATTATTAGTAATGTAGTGAGTGATAGTAAGTAGGTG
ATTTGATGTTTTATATTGTTGTGATGTATTATGTGATTGTGAGTGTTTAG
AAATAGAGAGTTATTTTGTATGTTTGGTAGATATATGTATGGTTGTAGGA
AGTGGAGTATGTTTAATGATTGAAAATTGAATATGTATGAAGTGTAGATA
TGGTATTAAGTTTATTGAGTGTGATAGTGATTGTATTAATGTAGTAATGA
TGTGATGGATGTTGATATTTGTATGTGTATTATTAGATATGAGTAGAGTA
GAGAAGTTTAGAAAGTGTAATGTGTATCGTTATGTAGTAGTGTGGTGTGT
GATGTATCTGTAGAGTGTGAATGAAAAGAGGAAGAATGTGGATGGATTAT
AAATGATAAATAGGATGTTATGTGTATAGGTATAATAGTATGTTAGAGTA
TAGAATGTGTTTGTTATGATATTATTTATTGTAGTTGAGTATGGCGAGTT
GATATTGATAGATGTGATTAAGTTGGTATTGTTTGTAGGATGATTGGAGT
AGATGAGTAGATTTGTGATATGATTATTGTTGTATTGGTGGGTTTAGATG
ATTTGGTAGTTAGTATGTTTGATTGATGTTTGTTATTATTTAA

NCCAATTCTTTTTTTAAGATGGGAGGCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAATAAACATTAAAAG
CAAGTTAGTTTGGTGTGATGTTCACTTCTTTGATGTATCATGTTTTCTAT
TTTCTCACACTGGTCTCAGACTTCTGAACTCAAATGATATTCCTACTTCA
TACTTGCAATTAGCTAGATGTACAAGTGGATTCCTCCCTGCCTGCTTATA
ACACAGTCATCCTTTTCTTTTACTAAGACAGAATCTCACTATGTATCTCA
GACTGGATTCAGTCTTGTGATCCTCTGTCTTAGTCTCCTAAGTGTTAAGA
TGATAGGTGTGTGTGTGTCTGCCTAGTTTAAATCCAGATATGTTTTGGGA
GAATGTTGCAGGAATTTCCTAGCCTGCTTACAGAACTCATTAGAAATTAC
TAGGTCCTTTCTTGGTCCTTTATACTTTAAAAAAATACCTGTATAATCAG
TTGACTATCTAATTGATGACAACAATAACCAAAACAAATGGACACTGTAC
AGAAAAATCCAGGAAAATCACTGCACAAACAGAAGCAACACAGGACCAAT
CCATAAGTCCCACAGGAAAAATATGATTTCCAGACTTCAGATGTTTTATT
AAGTACAGTGGGTGATTTCTAAAAAACAGCAAAAGAGACATTATGTAAAT
CAAATCATATCAAAACAAAACAAAGGGAGCCTTGGGGAACTGGTAAACCT
CTCAATGCTTCAACTTGTGTCTATGGTTGTCTACAGAGAGAATGCAATTA
TTAGCTGAAATTAATAGAACTTGGAAAGGTAATGAATATTTCCCAAGTTT
TTTGAATTCCATTTACATCCAATATTCCCCATTTTTTTTTTTTCCCTACA
TAAAATGACTCCCAGTATGTCAAAACACTTTATATTCACTTCGCCAAAAA
ACCATATTAAAAAGTCCTGGAGAAAACGCCCTACAGGTTACAGTATTCTC
CTGTCCCAGCATTAAAAAAGTTATATCAATCCCCCACAATTCACTTTAAA
AATTTGTTTGTGGTGGTTAAATGGAACCCCAATGCAAGCCATATTGCTAA
AAAATTGGTCGGGAACCTTAAGTCTTTTTTGTCTAACATTTTATTCTAAA
ATGGGACCCCTCTTTAATTGTTCCCTTTACCAAGAAAATTTTCTTAAGCA
CAACAGGTGTTATAATATTTGTATTATAGTATCTTGTCCCCTTCAATATG
CTTATTATTGTGGCCTCCTGGGTGGTCGCTCCTCCCTTATATTAATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_i08.g1 MSMg01no106_i08.g1 CHROMAT_FILE:
MSMg01no106_i08.g1 PHD_FILE: MSMg01no106_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:05 2005
         (599 letters)



>mm_chr9_25885065_25886064
          Length = 1000

 Score =  915 bits (473), Expect = 0.0
 Identities = 507/519 (97%), Gaps = 3/519 (0%)
 Strand = Plus / Minus

                                                                        
Query: 82   ggtctcagacttctgaactcaaatgatattcctacttcatacttgcaattagctagatgt 141
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1000 ggtctcagacttctgaactcaaatgattttcctacttcatacttgcaattagctagatgt 941

                                                                        
Query: 142  acaagtggattcctccctgcctgcttataacacagtcatccttttcttttactaagacag 201
            ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 940  acaagtggattcctccctgtctgcttataacacagtcgtccttttcttttactaagacag 881

                                                                        
Query: 202  aatctcactatgtatctcagactggattcagtcttgtgatcctctgtcttagtctcctaa 261
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880  aatctcactatgtatctcagactggattcagtcttgtgatcctctgtcttagtctcctaa 821

                                                                        
Query: 262  gtgttaagatgataggtgtgtgtgtgtctgcctagtttaaatccagatatgttttgggag 321
            |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820  gtgttaagatgatag--gtgtgtgtgtctgcctagtttaaatccagatatgttttgggag 763

                                                                        
Query: 322  aatgttgcaggaatttcctagcctgcttacagaactcattagaaattactaggtcctttc 381
            |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 762  aatgttgcaggaatttccaagcctgcttacagaactcattagaaattactaggacctttc 703

                                                                        
Query: 382  ttggtcctttatactt-taaaaaaatacctgtataatcagttgactatctaattgatgac 440
            ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702  ttggtcctttatacttaaaaaaaaatacctgtataatcagttgactatctaattgatgac 643

                                                                        
Query: 441  aacaataaccaaaacaaatggacactgtacagaaaaatccaggaaaatcactgcacaaac 500
             ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 642  cacaataaccaaaacaaatggacactgtacagaaaaatccaggaaagtcactgcacaaac 583

                                                                        
Query: 501  agaagcaacacaggaccaatccataagtcccacaggaaaaatatgatttccagacttcag 560
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582  agaagcaacacaggaccaatccataagtcccacaggaaaaatatgatttccagacttcag 523

                                                   
Query: 561  atgttttattaagtacagtgggtgatttctaaaaaacag 599
            ||||||||||||||| |||||||||||||||||||||||
Sbjct: 522  atgttttattaagtagagtgggtgatttctaaaaaacag 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 1000
Length adjustment: 10
Effective length of query: 589
Effective length of database: 990
Effective search space:   583110
Effective search space used:   583110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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