BAC Information

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BAC

Clone NameMSMg01-107G18
Chromosome9 (Build37)
Map Location 77,614,591 - 77,614,916
singlet/doubletsinglet
Overlap geneGclc
Upstream geneTinag, LOC436082, 2310046A06Rik, 5730403I07Rik, Lrrc1, Klhl31
Downstream geneLOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-107G18.T7 (MSMg01no107_g18.b1)MSMg01-107G18.TJ (MSMg01no107_g18.g1)
ACCAG321227AG321228
length1,2761,344
length of high quality
(start - end)
705 (43 - 747)329 (140 - 468)
definitionCHROMAT_FILE: MSMg01no107_g18.b1 PHD_FILE: MSMg01no107_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:09:17 2005CHROMAT_FILE: MSMg01no107_g18.g1 PHD_FILE: MSMg01no107_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:09:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGAGATTANNNNNCGGCACTGGGCGCTATAGACTCCTATAGGGAGAGG
ATCCGCGGAATTCTTTGTCCAGGGTAAGCCCGTGAGCTTTCCTCCCCTTC
CTGTTAGCATGTCTGTTGGCCCTGTCATTGCTCCCATCTTGTTTATGCAG
CCATTTCTTGGGGAGACTGTTTCACAGCATGGGAGACACAAAGGTCCTTG
TGCTTACAGACATGCATTAGGGAAACCAGGCGTGTTAATCATGCAGAATT
GTCTCTTCAATCGACAATTCAATAGAGCGGTTTTCTGCCCAGAAGGATCG
AAATGGACGTGGTTAATAGCCTTGTGACCTTTGCAGTGTGTGACCTAGAC
CACATTGGAGCCTCCCCAGACCCTTATCATGAGCTAGGTTTTCTCAGTCA
ATCTATAGAACCCATCTTTATGGAAGATGCCACATGTATTTTACAAAGAA
TTTTAATGTAGTCATGTCTTAACCATTATTGTGTACACAGAATTAAGTTA
ATTATTAACTGGAAACTTTTTCCCAAATTGTGTTATACTTACATAAACTA
CACGGTGTCAAACTCTCAAAGTCTGAACCAACACTAGCCATGGAGTCATA
CTGAACCAGACCCCCTTCTTCCCTCTTGTGGATTGACACTCTGCTGGCCA
TGGTATTGGCAGAGACCACCCACAACTGAATCTATGATGGAAGAACCTTT
CAGGACATAAAACACAGTATGCAGACAGCACCACCTGCCAAAATAAAGAC
AAACACCTAATCTATCAAAGTCTGGGAGCCTCTAAATGTACTAACCTTGC
TTTTTGGTTTCTGTAATTCAGCTGCTAGCTAACTGCTCATATTAACTTAA
GTAGCCAACCCCCAAAATAGGGGATTTTTTGCTGAAAAACTAACCTGAAA
AAAGGTTGAAACTGCACTGGCATTCCCAATGGCCCAGTCTAATCACTGAC
CATGTAACACATACTTTCCTTGGGCTTAAACTCAGGTCTGAACAATCTTC
TCGGGGGTATATTTTTTTCCCTTTTTTTTTTTTTTTTTCCCCCCGCCCCC
CCCCCTTTAGCTTTTTTGCAAATCTTTTTCACGTTTCCCTGAACCATGAA
TTGCAGGACCTGGTGGGTTAAAAATTTCCCCTGGGGCCTGGGCCACCCAA
GAAAAAATCCCTTTCTGCACTTTCCAACAAATTCCAAGTTTTCTGGTATG
GGTTTTCCCGCCACACAAGAAGATATTTTTTCTAATGGAGGTTAATCAAA
CTTCTCCGGTGTGGTACATAAATATT
NNNCCAGATTTTTNNNNCCTGACGGTTAGCTGGGGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTTAGCTCTTTCCCCA
AACTATAATCCTCTGCCAGAGCCCCTTTCACAGCGTACAGGGCGGCTGTT
TTCATTGAACTGCCCTGCAGTAGGCAGAGCTGGAGAGGAGCTGAGGTCAC
CATCTTAAGTGTGTGAGAACTGTGGACTGGGTGGCCTCAGCACAAAAGCA
GTCTAGTACTAGAGAGAACATGCATGGGTATTCTCTATGGGTAGCAACCC
ACTCAGTGCCTGAGGCACCAGAGAGGTGAGTAAACACATCCCCTTATACC
GTGTTTACTTTGTCCTAAGTCCTGTGAGAAACAGGAGGATGTGGTTTAAG
TTCCTAGGAACCAATCTTTAAACAGGTAACTCCAAAGCACCCACTGTACT
CACAAAGGACCATGCTTGTTTCTCACCCCCGATGTCAGAAACACAAGCCC
CCTTAAAAGGGGGGGTTGTAGTTCAATGTCATCCCAAACTGTTAAGCATC
TGAATGTGAATACTCTGTAAGTCACAGCTCACAGATGCAATGTCAGGGTC
CCCAAGCTGTACCTGATGTTAGCAGGCTGAGCATCAGTCATCCCACCCTG
CTTTAGACATGACCTGTGACACTCAGACAAAGCTGAATCCTGTCTAAAGG
TCATGGGTCTCTGGTTCAATGTAGGCTGCCTAACTCCTAAGCTAGCTCAG
CCTGATTAGCTTCTGAAGGACTGCTCTAGTCTTTGCCTTTCCTCGACTCA
TTGTGCCTTCATAGTGTCTATGAAGGCTGTCTTTACTCATTCAACTTGCC
AGTCTCTGTTCCTTGCACCCTGGTTTAAACTTATTTCAGTCTTGCTCATT
GCTTATTCTTGTTGACCTCCTCCCTTTCCGGTTAATCTAAAAATGCCTTA
CTTTCCCCCTTTTTTGGGTTCTGAAAATTCTATTATAGTCCCTCCGGTTA
GTAATTGTTCCTTCTTTCCCTTTGTCCCTAATCCCTCTTTCTCCATTGTC
ACCTGAGTAGTAAATTTTGGTTTCTCTCTTATCATATTTCTTCTTTAGCT
TTTCTTTTTATAATACCTCCTGTGTTCTTTCTTCCTCCTTATTTTCGATT
CTGCTTCCTTTTTTTGATGCACCTTTGCCTTTCATTTATCCCGTCGTTAT
TCTTATTTATTCTCTCACTTTTCTATTCTTATACACCTCTATAAATCTTT
TATTATGTGATTCCTCGACTCTCTTCTTACATTACGCGCACCTCATCTCT
CTTATCTACTCTCTATCTAATCATTCTCTTCTTTTGTTATTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no107_g18.g1 MSMg01no107_g18.g1 CHROMAT_FILE:
MSMg01no107_g18.g1 PHD_FILE: MSMg01no107_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:09:17 2005
         (329 letters)



>mm_chr9_77614391_77615119
          Length = 729

 Score =  592 bits (306), Expect = e-173
 Identities = 321/326 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggcggctgttttcattgaactgccctgcagtaggcagagctggagaggagctgaggtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 526 gggcggctgttttcattgaactgccctgcagtaggcagagctggagaggagctaaggtca 467

                                                                       
Query: 61  ccatcttaagtgtgtgagaactgtggactgggtggcctcagcacaaaagcagtctagtac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ccatcttaagtgtgtgagaactgtggactgggtggcctcagcacaaaagcagtctagtac 407

                                                                       
Query: 121 tagagagaacatgcatgggtattctctatgggtagcaacccactcagtgcctgaggcacc 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 406 tagagagaacatgcatgggtattctctatgggtggcaacccactcagtgcctgaggcacc 347

                                                                       
Query: 181 agagaggtgagtaaacacatccccttataccgtgtttactttgtcctaagtcctgtgaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 agagaggtgagtaaacacatccccttataccgtgtttactttgtcctaagtcctgtgaga 287

                                                                       
Query: 241 aacaggaggatgtggtttaagttcctaggaaccaatctttaaacaggtaactccaaagca 300
           |||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||
Sbjct: 286 aacaggaggatgtggtttaagttcctaggaaccaatcacaaaacaggtaactccaaagca 227

                                     
Query: 301 cccactgtactcacaaaggaccatgc 326
           ||||||||||||||||||||||||||
Sbjct: 226 cccactgtactcacaaaggaccatgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)