Query= MSMg01no107_k20.b1 MSMg01no107_k20.b1 CHROMAT_FILE:
MSMg01no107_k20.b1 PHD_FILE: MSMg01no107_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:09:53 2005
(327 letters)
>mm_chr9_84299122_84299848
Length = 727
Score = 499 bits (258), Expect = e-145
Identities = 309/334 (92%), Gaps = 14/334 (4%)
Strand = Plus / Plus
Query: 1 ttattatcatagtaaatgtgaaggatttggtatggttccttttacataagcagtggtaga 60
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 ttattatcatagcaaatgtgaaggatttggcatggttccttttacataagcagtggtaga 260
Query: 61 agtctaatactgtagggttcaacaagtgagaaaaagcgaggaccttcaccaatgggttga 120
||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||
Sbjct: 261 agtctaatactgtagggttcaacaagtaagaagaagcgagaaccttcaccaatgggttga 320
Query: 121 agcactggagaatgacttaggaaacttatatggctggaggtgtctttccaaacagagata 180
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 321 agcactggagaatgacttaggaaatttagatggctggaggtgtctttccaaacagagata 380
Query: 181 gcagcatgtgagtgtttctaaaggatctcccttgtccctgagaagatcattaagtctcat 240
||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 381 gcagcatgtgactgtttctaaaggagctcccttgtccctgagaagatcgttaagtctcat 440
Query: 241 aatataaaatccagtgagcagtagatggtgatttattttttt-------atccataacca 293
||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 aatataaaatccagtgagcagtagatggtgattta-------cacagaaatccataacca 493
Query: 294 gttgaaggtacagaaaatataagattggcaatgc 327
||||||||||||||||||| ||||||||||||||
Sbjct: 494 gttgaaggtacagaaaataaaagattggcaatgc 527
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space: 228324
Effective search space used: 228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no107_k20.g1 MSMg01no107_k20.g1 CHROMAT_FILE:
MSMg01no107_k20.g1 PHD_FILE: MSMg01no107_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:09:53 2005
(165 letters)
>mm_chr9_84467041_84467605
Length = 565
Score = 310 bits (160), Expect = 4e-89
Identities = 163/164 (99%)
Strand = Plus / Minus
Query: 2 aaaaggaatgtgcttcagggtaatgatttttttatatataataaatcaggagctaataag 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 aaaaggaatgtgcttcagggtaatgatttttttatatataataaatcaggagctaataag 352
Query: 62 aaagaacttaaagactcctatatttgatctgaaggaaagcaaggactctcacctccattg 121
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aaaaaacttaaagactcctatatttgatctgaaggaaagcaaggactctcacctccattg 292
Query: 122 cttcctttaacatagacctatcaggctgtaggagaattgaatag 165
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cttcctttaacatagacctatcaggctgtaggagaattgaatag 248
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space: 87449
Effective search space used: 87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
