BAC Information

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BAC

Clone NameMSMg01-108B12
Chromosome9 (Build37)
Map Location 13,325,370 - 13,325,670
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039680, LOC665285, LOC100039729
Downstream geneLOC100039758, Maml2, Mtmr2, Cep57, 2810485I05Rik, LOC665329, Sesn3, Endod1, LOC665351, EG547035, Jmjd2d, 0610040D20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108B12.T7 (MSMg01no108_b12.b1)MSMg01-108B12.TJ (MSMg01no108_b12.g1)
ACCAG321632AG321633
length719708
length of high quality
(start - end)
340 (43 - 382)290 (80 - 369)
definitionCHROMAT_FILE: MSMg01no108_b12.b1 PHD_FILE: MSMg01no108_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:49 2005CHROMAT_FILE: MSMg01no108_b12.g1 PHD_FILE: MSMg01no108_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAATATTTTCCCTTAACATATAACCAGAGTCCATCACTGACATGATACC
TGGGGCTTCACTGGTCAATCAACTGTGATGATTTGCTGGCTTCAGGTTAT
ATTTTTTTAAAAAATACACTGTGTGAATTCGGTGCATGTCTCTTTAAGTC
TTGATTAGTGTTTCTATAAGGGTGGAGTTATTTTGAATGTGACAGATTGA
TCAAGTCATTAAAATGAGTCAGAGATCTATTTATCTTCCCTACACTCTAA
GCACTACTATTTAAGTAAACAATGTATTTTTGTCCAAAAACTTTTGCAAG
CACTTAAATTTTATTTGAAAAAAGAACTATTTCCTCAGCAGACTCTGCTT
TGCACTTCACATACCTTGCAACTCCAACTTGCCTTTATGTTCAAGTCTCT
TAGCACAGGTAGCGGAGGGAGGAGAGAAAGAAGGAATCATTTACTAAAGT
TATTTTCCATCCTATTGAACCACTGTGTCCGTACCTGCATAGAAAGGAAA
ACAGTATTTCTATTCTGGGACTTTAAGAGACTATCCACCCCTCTGTCTAC
TGCTCTTGGTTTATCTGAAAAGCAGTGTTCCTATTTTTTGAATTGTGCTA
TAGTTATGTGAAAATGAAAGCCCTAAGATTATTTCGGCTCTTTTTGAGAG
TGCATTAAAACCCTTGATC
GTTTTCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGGGTCCATGCCCTCGCCT
CAAAGGACACCTGCTTCACTTCAGATCCTCCCAAAATTTTGGTTTGGAAG
CTCTGTTTTCAGTCAGTGTCTGTGGCATAGTAAACTTTATGTGGCACACT
TAGGAGAGATGTCTAAGGAAGATGTAGCGCTTTTCTTCCACACATTCTGA
GTTTTATTGAGGATAGCCAATTTTAGCTGATAAAGGTTGCGTTCCCATGT
ATCAGGTAGGGAAAGGGCCCCAGACTGAGGAACAAGTGTGATTCTGTGAC
GTCGCTTCCAGCTGATGGCATGGGTATCAGCTCACAGGGTGACTCTACTT
GGCGATTGGATGATTCTTCCAACCTGTTCCACATCTCTGCTTCTTCTCAT
TGAAAGGCTGATGCCCGAGAACATGCACTACCAGAATCCTCTTCTTCCCT
CTTAAAGGTCATACCTGCGTTTTCCTCTTGCTCTGCCTGCCTAGTTTCCA
CTAATCAAAGCCCCGTTCCTCTATCAGCTTCTTGGTCATATTTCATCTGA
CCCTTCGGTCGCTGATCCTTGGTATACAGCATTTCGCACCTTGTGCCTTC
TGACTCTTGACTCCAATATGCACCTGGTCCCTGCATACCCCCTGAGCCCA
TCTGTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_b12.g1 MSMg01no108_b12.g1 CHROMAT_FILE:
MSMg01no108_b12.g1 PHD_FILE: MSMg01no108_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:49 2005
         (290 letters)



>mm_chr9_13325202_13325891
          Length = 690

 Score =  482 bits (249), Expect = e-140
 Identities = 283/301 (94%), Gaps = 11/301 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagggtccatgccctcgcctcaaaggacacctgcttcacttcagatcctcccaaaattt 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 469 ttagggtccatgccctcgcctcaaaggacacctggttcacttcagatcctcccaaaattt 410

                                                                       
Query: 61  tggtttggaagctctgttttcagtcagtgtctgtggcatagtaaactttatgtggcacac 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 409 tggtttggaagctctgttttcagtcagtgtctgtggtatagtaaactttatgtggtacac 350

                                                                       
Query: 121 ttaggagagatgtctaaggaagatgtagcgcttttcttccacacattctgagttttattg 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ttaggagagatatctaaggaagatgtagcgcttttcttccacacattctgagttttattg 290

                                                                       
Query: 181 aggatagccaattttagctgataaaggttgcgttcccatgtatcaggtagggaaagggcc 240
           || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 289 agaatagccaattttagctgataaaggttgcgttcccatgtatcaggcagggaaagggcc 230

                                                                       
Query: 241 ccagactgaggaacaagtgtgat-----------tctgtgacgtcgcttccagctgatgg 289
           ||||||||||||| |||||||||           ||||||||||||||||||||||||||
Sbjct: 229 ccagactgaggaataagtgtgatgctgtgtgacttctgtgacgtcgcttccagctgatgg 170

            
Query: 290 c 290
           |
Sbjct: 169 c 169


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)