BAC Information

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BAC

Clone NameMSMg01-108E04
Chromosome9 (Build37)
Map Location 25,873,006 - 25,873,447
singlet/doubletsinglet
Overlap genenone
Upstream geneHerpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
Downstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108E04.T7 (MSMg01no108_e04.b1)MSMg01-108E04.TJ (MSMg01no108_e04.g1)
ACCAG321755AG321756
length702702
length of high quality
(start - end)
451 (44 - 494)356 (74 - 429)
definitionCHROMAT_FILE: MSMg01no108_e04.b1 PHD_FILE: MSMg01no108_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:03 2005CHROMAT_FILE: MSMg01no108_e04.g1 PHD_FILE: MSMg01no108_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAATCGGTGTACCTTCTATGCTCCCAGTGAAAATTAAAGCTACCTTTG
CCAGGCTGGAGTGGAATCTGTGGCTAGAGATCATGGGAGCCCTGCAAAAC
AATGGTAACTTAGAACAGTAGTCAAAGAGGCATGAAGAACAACCCAAAGA
TACCAACCATTTGAATGTGTATTTTGTTAATCTTTGCTCACAAATGCTTA
AATGAAAGCAGCAAAAATCACATCACTAATGTATTCTTTTCTGCAGAGAT
GGGGGCTTTCTTTGATGGGGCTATATCAGCATTATCCCAGGACGCCTGGA
AACACAGGGTTGTTTATGTTTATATGTTTATATGTGTGTATACGTGTACA
TGTAAATGTGTGTGTTTCAGTGTGTCTGTGTGTGTGTGTCTCTCTGTTGG
TCTGTGTGTGGATTGTGAAGGTGTGGATTTCTGTCCATTGGCTTTACAAC
TGGGAAGGTCTGTTGATTGCTTAAGAACTGTTGATTGCTTCTGTCCTTTT
AATAACTTACATAGCACCTTTGGAATCTAGGGCACAGGTTATCCTGATTT
AAGCTTCCTGGTCAGTTCCAGCCAATATTGCAATGACCTTTTGCCTGAAA
TGTATGGTATTTTTAGTGAAAGGGTTCTTCACTTCCAGTTCTGGTATTTC
AG
ACGATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTCAGAGTCCAGTTGTCTCTGTGATCC
TGGGATTCTGAGATTTTGGGATCCTGAGATCCTGGGTGTGTTAGGGTTCC
TGGGAGTCAAGTTGTCTCTGGGATCCTGAAATCCTGTTTTGACCAAGCTT
CTGTGATCCTGTTGTGTCAGAGGTCCTGGGAATCAAGCTTTCTCTGGGTG
TTGCAGGGCTGTTTGGGGAGCCAGATCCCTGGGTTTTCTCAGGGCATAGG
TGCAAGCTGGAAGGAACCTGTGCCTCTGGCTGGGCTGGCATTTGTATTTC
CCTGGTTCCTGTGGGCATCCCAGTTACACTGGGTGTTGGGAAAGATATTG
TGGCAGAGGTTCAGTGTTCCAGGTTGTGTCCGATCTCCTAGGAGTTGAGC
TTCCTCTGTAATCCTGTGATCCTATGATCCTGGGCATTTCACAGTACCCT
GGGATTTGTGGTCCCCCTGGCTATTTTAAGTGTGCGCGTAGAGCCTGTAT
CCCAGGTTCTGCTCCAGTTGCAGGTTTTGAACCCAATAAATTTATGTCCT
TGGCTTGGGTGGGGATTCCTATTGTCCCTGCATCTTGTGGGAACCCCAAA
CAAAATTGCCTATTCTTTTTGAGTTTAAAGCCAATACTTTATCCTATTTT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_e04.b1 MSMg01no108_e04.b1 CHROMAT_FILE:
MSMg01no108_e04.b1 PHD_FILE: MSMg01no108_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:03 2005
         (451 letters)



>mm_chr9_25872914_25873764
          Length = 851

 Score =  762 bits (394), Expect = 0.0
 Identities = 432/450 (96%), Gaps = 10/450 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaatcggtgtaccttctatgctcccagtgaaaattaaagctacctttgccaggc 63
           ||||||||||| ||| |  |||| |||||||||||| |||||||||||||||||||||||
Sbjct: 534 ggaattcaatcagtgaagtttctgtgctcccagtgagaattaaagctacctttgccaggc 475

                                                                       
Query: 64  tggagtggaatctgtggctagagatcatgggagccctgcaaaacaatggtaacttagaac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tggagtggaatctgtggctagagatcatgggagccctgcaaaacaatggtaacttagaac 415

                                                                       
Query: 124 agtagtcaaagaggcatgaagaacaacccaaagataccaaccatttgaatgtgtattttg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 agtagtcaaagaggcatgaagaacaacccaaagataccaaccatttgaatgtgtattttg 355

                                                                       
Query: 184 ttaatctttgctcacaaatgcttaaatgaaagcagcaaaaatcacatcactaatgtattc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ttaatctttgctcacaaatgcttaaatgaaagcagcaaaaatcacatcactaatgtattc 295

                                                                       
Query: 244 ttttctgcagagatgggggctttctttgatggggctatatcagcattatcccaggacgcc 303
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 294 ttttctgcagagatgggggctttctttgatggggctatatcagcataatcccaggatgcc 235

                                                                       
Query: 304 tggaaacacagggttgtttatgtttatatgtttatatgtgtgtatacgtgtacatgtaaa 363
           |||||||||||||||||||||||||||||||        |||||||||||||||||||||
Sbjct: 234 tggaaacacagggttgtttatgtttatatgt--------gtgtatacgtgtacatgtaaa 183

                                                                       
Query: 364 tgtgtgtgt--ttcagtgtgtctgtgtgtgtgtgtctctctgttggtctgtgtgtggatt 421
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tgtgtgtgtgtttcagtgtgtctgtgtgtgtgtgtctctctgttggtctgtgtgtggatt 123

                                         
Query: 422 gtgaaggtgtggatttctgtccattggctt 451
           ||||||||||||||||||||||||||||||
Sbjct: 122 gtgaaggtgtggatttctgtccattggctt 93


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)