TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTCATTGGACGGAAATGGGTGTGAGGTGTTTAATGATAATTTTTAAC
TTGAGAGAATCCAGAATCTCTCTGGGCCTGTGAGGGATTCACTTGATTTC
CTTAGTTGAGGGTCTACCCCACTGTGGATGACACTCTTCCCTGGCTGGGA
TCCTGGGCTGAGGACATGGAGAAAGAGAAGGAAGCAACAACAAGCATTTA
CACCTCTCCTCTTCCTGACTCTGGATGCAGCGTGGTCAGCTGTTAGGTGC
TTCTGCTGCCTCAACCTTTTCCAAGCATTAAGATAAAAAACAGGCATAGC
AGCACACACCTATAATCCCAGCTCCGAGGGGAGGGGTATCGAGGGAGAGA
AGTAGATGCCTAGGCCTTGCTGACCAGTCAGTTTAACCATATTAGTGAAC
TCTGGATTCAATGAGAGACCCCATCTCAAAAAATTAGGTGGAAAGCATCT
GGCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CACACACACACACACACCCTTGTGTGTGAGCACAAATTTACCAGATAAGA
GTCTGTATTCCCATCCCACGCGCTCTCTAGAGCCCGTGTTTTGGACAACC
TCCCCCCCACTACCCAAGAATATTTGTGTTCACTTTTAAAAATTTCA

CGATGCAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTTACCCTAAAAATGTATCCATTCAGA
GCTCTTAACAAAGAACAACTTAGGCTAGTCAGGTGTCTTACACATGCAAC
ATTACTCAACAAAGGCAGTTACAAAGGCGTAAATAAGTTTGTCCTGAGTG
ATAAGTTAATGAAGCTATTGAAATTCATTGGAGTCTAGTCAGTCTGCAGG
TATTCACTGTAGACTTTGTAAGCACAGGATATAAGCATAATGCAAGTCCT
GTAACATGAGAAAATGAAATGCTACATTTAGAAAATGCAGTAATGTAAAA
GGGACAATGGGTTTCTCGAAGGCAATTGCTATTCGTTCCCTTGGCATGGG
CAACCTGCTTTCCCCCTCTTACCTGTTACCCCGATTAGAGTTCATGGCTA
ATTCAGAGTCACCGGGGGAATTATTTGGTGACTTTAGTGCTAGTGTTGTT
GATAGTGCACTATTGCTACTTGCTTAAACAAATAGGCTTGGGTTATACAT
TAAAAATACTGCTTTTTAAAAGACCAAAAGTTACTTTTTTGTACATGCTT
ACGCTATTCAGTGACTTTGAACTGGCTTAAGGTCATATAGTTTGCAGATA
TAGAGACAGATGGATAGGTAGGTAGATAGATAGATAGATAGATAG

Query= MSMg01no108_i12.g1 MSMg01no108_i12.g1 CHROMAT_FILE:
MSMg01no108_i12.g1 PHD_FILE: MSMg01no108_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:25 2005
         (570 letters)



>mm_chr9_104528617_104529587
          Length = 971

 Score = 1089 bits (563), Expect = 0.0
 Identities = 569/571 (99%), Gaps = 1/571 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttacc-ctaaaaatgtatccattcagagctcttaacaaagaacaacttaggctagtca 59
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tcttaccactaaaaatgtatccattcagagctcttaacaaagaacaacttaggctagtca 712

                                                                       
Query: 60  ggtgtcttacacatgcaacattactcaacaaaggcagttacaaaggcgtaaataagtttg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 ggtgtcttacacatgcaacattactcaacaaaggcagttacaaaggcgtaaataagtttg 652

                                                                       
Query: 120 tcctgagtgataagttaatgaagctattgaaattcattggagtctagtcagtctgcaggt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tcctgagtgataagttaatgaagctattgaaattcattggagtctagtcagtctgcaggt 592

                                                                       
Query: 180 attcactgtagactttgtaagcacaggatataagcataatgcaagtcctgtaacatgaga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 attcactgtagactttgtaagcacaggatataagcataatgcaagtcctgtaacatgaga 532

                                                                       
Query: 240 aaatgaaatgctacatttagaaaatgcagtaatgtaaaagggacaatgggtttctcgaag 299
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aaatgaaatgctacatttaaaaaatgcagtaatgtaaaagggacaatgggtttctcgaag 472

                                                                       
Query: 300 gcaattgctattcgttcccttggcatgggcaacctgctttccccctcttacctgttaccc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gcaattgctattcgttcccttggcatgggcaacctgctttccccctcttacctgttaccc 412

                                                                       
Query: 360 cgattagagttcatggctaattcagagtcaccgggggaattatttggtgactttagtgct 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 cgattagagttcatggctaattcagagtcaccgggggaattatttggtgactttagtgct 352

                                                                       
Query: 420 agtgttgttgatagtgcactattgctacttgcttaaacaaataggcttgggttatacatt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 agtgttgttgatagtgcactattgctacttgcttaaacaaataggcttgggttatacatt 292

                                                                       
Query: 480 aaaaatactgctttttaaaagaccaaaagttacttttttgtacatgcttacgctattcag 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 aaaaatactgctttttaaaagaccaaaagttacttttttgtacatgcttacgctattcag 232

                                          
Query: 540 tgactttgaactggcttaaggtcatatagtt 570
           |||||||||||||||||||||||||||||||
Sbjct: 231 tgactttgaactggcttaaggtcatatagtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 971
Length adjustment: 10
Effective length of query: 560
Effective length of database: 961
Effective search space:   538160
Effective search space used:   538160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)