BAC Information

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BAC

Clone NameMSMg01-109P23
Chromosome9 (Build37)
Map Location 15,367,093 - 15,367,330
singlet/doubletsinglet
Overlap geneCcdc67
Upstream geneAmotl1, EG665374, Piwil4, Fut4, 1700012B09Rik, Ankrd49, Mre11a, LOC100040259, Gpr83, Folr4, Panx1, Hephl1, 2200002K05Rik, Crsp6, 4931406C07Rik, Josd3, 5830418K08Rik, LOC100040375, LOC100039955, BC017612
Downstream geneLOC665461, LOC330891, Slc36a4, Mtnr1b, Fat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109P23.T7 (MSMg01no109_p23.b1)MSMg01-109P23.TJ (MSMg01no109_p23.g1)
ACCAG323036AG323037
length727737
length of high quality
(start - end)
316 (48 - 363)239 (76 - 314)
definitionCHROMAT_FILE: MSMg01no109_p23.b1 PHD_FILE: MSMg01no109_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:25 2005CHROMAT_FILE: MSMg01no109_p23.g1 PHD_FILE: MSMg01no109_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTTATTTATCCAGTTTTGCTTTTGTAGGACAAGGTCTCAAGT
AGCCCAGGCTAGTTTTAATCATATGATGTAACCAAGGCTATCCTTCATAT
CGCGCTCCTCCTGCTTTCACTTACCCCTAACATACACACACACCTGCTAG
GATTACAGGTAAGCACCAGCCCAGCTGGCTTACATTCATTATTTTTCCAT
TATATAACAATAGAGCCAGGAAGGGGACTCCCAACCTTGTGGCACAGCCT
GTGATGCCAGCTACATGGAACACTGATACAAAAGGATGACACGTTCAAGA
CATGACTGGGCTACACTGTAAGTTGAATCCAGCAAGCCTGTCTCAAAACA
AAAATAGGCCAGTTTGCACCAGTTTACCTTGTGTTGGGTGCAAACTCCTC
AGCCAGTGCCACAGCACACAGAGGAGGCTCCACTCCCAGGCGCTCTAGCA
CACCCAAGATCTTAGTATCAGAGGTAAGTAGGACACCTGTTCTGCTGAGA
AGGATATCTGTTCCAACACCACCAGGAATAACTGGTACCAGCGTTGTTCA
GAGATGTAAGAACCCTATCAGATCAGTGTCAAGGATTCCTATCCAGCCAG
TGCCCTTAATTGTCATCTATCACCCATAAGAGGTCCCAAACCCAGCCATG
TTATACACCAAAATACTACACTATCCT
NATCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATAGGCCCTTGTCCATACGGACAC
TCAAAAGACCATTCCTGTGGACTAACATCAGGTTAGTAAAGCCCATGAAC
TCAAGGCTTGAAAATATGCATCTACTTTAGAGGGTAAAACAAAGCCCCAC
ACAAGACCCAGGGCCTTGACATGTTATCAGGTTGTGTGGTGTCCATGTAG
AGTACAAGTTAACATGCACAAAAGTTCTGTGTTCTTGGATAGAATGACCT
GATGCTATCACTGCGCAGCACAGATTTGTTGGCAGGCCTAGAACAAAGGG
GCGTGGGGTTCCATAGTGTTTTCCGGATAGGCCAGAAATCCTGCCACGCA
TGTGAGGTTGAGTGTTATTCCTGTTGTAGAGAATACCGTGTCTGTTTCCT
ACCCCTCGTTCCCAGTTGTTATTTCCCACTCTCTAATATACTATGCTCTC
TCCCTTAAATTAATTTGTTTATATTTTCTTCTTTCATAATTATCTCTCGC
CTATTAACCTCCTATTTTCTTTATTCTTCTCCTTCCTCCCTCTCCCCTTT
CTATATATTATTTTATCCCCCTATCATTTTTTTCAATCACTACACCTCTT
CTGTTTTGTTTCTATTTAATTTTTTATCTACTTATCACCTCCTTCTTATC
TATAACTTTAAAATACTACCTAATTTAAATAAACCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_p23.g1 MSMg01no109_p23.g1 CHROMAT_FILE:
MSMg01no109_p23.g1 PHD_FILE: MSMg01no109_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:25 2005
         (239 letters)



>mm_chr9_15366893_15367531
          Length = 639

 Score =  437 bits (226), Expect = e-127
 Identities = 235/238 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataggcccttgtccatacggacactcaaaagaccattcctgtggactaacatcaggtta 60
           |||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 201 cataggccgttgtccatacggacactcaaaagatcattcccgtggactaacatcaggtta 260

                                                                       
Query: 61  gtaaagcccatgaactcaaggcttgaaaatatgcatctactttagagggtaaaacaaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaaagcccatgaactcaaggcttgaaaatatgcatctactttagagggtaaaacaaagc 320

                                                                       
Query: 121 cccacacaagacccagggccttgacatgttatcaggttgtgtggtgtccatgtagagtac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccacacaagacccagggccttgacatgttatcaggttgtgtggtgtccatgtagagtac 380

                                                                     
Query: 181 aagttaacatgcacaaaagttctgtgttcttggatagaatgacctgatgctatcactg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagttaacatgcacaaaagttctgtgttcttggatagaatgacctgatgctatcactg 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)