BAC Information

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BAC

Clone NameMSMg01-110D07
Chromosome9 (Build37)
Map Location 41,879,519 - 41,879,851
singlet/doubletsinglet
Overlap geneSorl1
Upstream gene2810457I06Rik, LOC628495, LOC100042464, EG667566, 6720432D03Rik
Downstream geneSc5d, Tecta, Tbcel, Grik4, Arhgef12, LOC545339
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110D07.T7 (MSMg01no110_d07.b1)MSMg01-110D07.TJ (MSMg01no110_d07.g1)
ACCAG323191AG323192
length730792
length of high quality
(start - end)
268 (78 - 345)333 (132 - 464)
definitionCHROMAT_FILE: MSMg01no110_d07.b1 PHD_FILE: MSMg01no110_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:42 2005CHROMAT_FILE: MSMg01no110_d07.g1 PHD_FILE: MSMg01no110_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATCTACTTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTAAGATTATCCCGTTGCATCGACCCCCCGGTGTGGCA
CCCTGGACGCCACTGGAGACCGAGGAATCATAACAGGGGCCCTGATCCTT
AGGAGTGTTTCCTCGCTTAAGGGAAATTAGGTCCCATGATGATGATGGCT
TCCAGTATGCCTGTCCAGTGGTCTCACATCCCCATTTGCCACAGTAGCCC
TCTCCCGGTCCTCCACACCCTATTGGTACAGTATGACCGGGGCAAACATA
GAAGTCATACAGTCTTGTCCTTCTTCTTCCCCCGGGAGTGCGGTAACCAT
CCTCAATATCGGGTTCTGTGTCATCCCAGTAGTCTCCTACTAAATCACAC
AGGTCAAAATATAGTTTACGCAACTTGTCTGTCATCGTCCCCAGTAGGGA
GGTGGTGTTAGCTGTTTGTCCTGTCTTTAGGCTGATAACTCTTTTAGTAT
ACATGCAGATTTGTTGAGCTCTGTTTTGTTGTACCGATTTTTTTGCCCTT
CCCAACATTTCCTTTCCATCTCAGTCCCCCCCTGCGCTCTTCTTATTCAT
CACTTTTTTTTTAATCCTCTGCCCCTTCAATCTGACTTTATATCCTTCTC
TTAATATTATTTTCTTCTTCCCTCCACTCTTTCACCCCCCCCCACCCGCT
CCTTCCTCTCTCCTTCTCCCCTTCTCTTCG
CCCCCCCCCCCCCNNNNNNNCCCTTTTTACCTTTTTTNTTTTTTCTTTCC
TNNATACTATGCTATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCATTAGTACATACTGAC
TGCTAAGAAGGCACAGTTGTGGATCACCAGGGTAGAGCCTGCAGCCAGGA
GGTTGCCTTGGAAGGCTTTGGCATCAGCCAGCGGGTATGTAACAGGAATG
ATGATCAGGTCTGTTTAGTTTCTATGGGTTCTTTCAGTCTCCCAAGGGAA
AAGAAGAGAAAATGAAATGCGTGCTAATCTATATTGTGCCTTGTGCTATA
AAAGGTCTGTTGGGGGAGAAGAGGAGACATCATTACCAAAAAGAGGTTTC
TAGGTCATTTATGGAGGTCAGAGGCCCATTCTTCTCTGGTGCTGTACCAG
CAAGCTCTATGGGTAGACCAGTCATGGATACTTGGAAGGGAAAATCATTT
CAGCTATGCCAGTTTGCAGGCGGAGGGGGGGCCTACCTGTGCCCCTCCAC
CCACTTTTTACCCTGGAACCTTTTGATGTTCTTGCCTGCCCGCTTTTTTT
ATATCCCCCCCTTTTTTTTTTGCCCTCTCTAATTTTTTTTTTCCTCTTTT
TCTTCCCCCCCTTTCTTTCTTCCCTCCCTTCCTTCCCTTTTCCCACCCTC
TTTATTCCCCTCTTCCCTATACCTTTTTTTCCCTTCCTTTTTCCTTTTTC
CTCCTCCTTATTATTTTTCTTCTCCACTTCCCCTTTCTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_d07.g1 MSMg01no110_d07.g1 CHROMAT_FILE:
MSMg01no110_d07.g1 PHD_FILE: MSMg01no110_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:43 2005
         (333 letters)



>mm_chr9_41879319_41880051
          Length = 733

 Score =  644 bits (333), Expect = 0.0
 Identities = 333/333 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcattagtacatactgactgctaagaaggcacagttgtggatcaccagggtagagcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 agcattagtacatactgactgctaagaaggcacagttgtggatcaccagggtagagcctg 474

                                                                       
Query: 61  cagccaggaggttgccttggaaggctttggcatcagccagcgggtatgtaacaggaatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 cagccaggaggttgccttggaaggctttggcatcagccagcgggtatgtaacaggaatga 414

                                                                       
Query: 121 tgatcaggtctgtttagtttctatgggttctttcagtctcccaagggaaaagaagagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tgatcaggtctgtttagtttctatgggttctttcagtctcccaagggaaaagaagagaaa 354

                                                                       
Query: 181 atgaaatgcgtgctaatctatattgtgccttgtgctataaaaggtctgttgggggagaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 atgaaatgcgtgctaatctatattgtgccttgtgctataaaaggtctgttgggggagaag 294

                                                                       
Query: 241 aggagacatcattaccaaaaagaggtttctaggtcatttatggaggtcagaggcccattc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 aggagacatcattaccaaaaagaggtttctaggtcatttatggaggtcagaggcccattc 234

                                            
Query: 301 ttctctggtgctgtaccagcaagctctatgggt 333
           |||||||||||||||||||||||||||||||||
Sbjct: 233 ttctctggtgctgtaccagcaagctctatgggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)