NATGTCCTNTTCATGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCTTTTTATGTCTGCTATTATTCTCAGTATTCC
CTCTTTTAGACCACCACCCCCATCTCCACACCATTTACTTCTTTTTTATC
CCACTATTCCCTTTGGATTTAAGAACTATTCCAAAACATAATCCTATATC
TGCCACTGTTACTGGAGCCAAGAACCTGTGGGCACGTTGCAGGCCCTTCT
TATAAAGAGAAACTTCTCTTATAAAGAGAACCCACTTAGAGCATTCTGCT
CAATGGGCATAATGTAACACAACTCCTAATGACTTATCAGACTTTGTGCA
TATCCATAGAATAATGTATCTCTCAACTCTGGAAAAAGAAGCTCCTATTT
ATAAGATTTTGATTAACATATAGAGATCTACAACTGGTCAATATGTATAG
AGTAAGAGATTGAGAAATGCTCAGTCCTAAATGGGACCCTTCTTGGAAGG
TTCATAAAGAGGGGGTGAAGATCATATATGCCAGAAGTGGTCAATGACTA
TAAGGAAACAGTTTTCCAGACATAATAGGGCACCTACACATATGAACTCT
CAGCTGTCATAACAGCAAGTACAAAACCTGCACTAGCTTAATCCAGCAAA
ACTCCCACCATGAAGGTGGGAAGTGTATTATGAAATCCTCCCTAAGGAGA
TATTATTATATGACAGCTTTCATAN

CTCACAATTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTAGGGCATCATTTC
CTAGGGTCTTTTGGGGCATTGTTTGAGAAAAACAGTCAGCTTTTCCTTAC
TATAGAGATCACATAACCACAAAGCACAAGTGCATTCTGCCATAGAGAGC
TCCTCTCAGCCCCTCTCATCTGCTTTCTCCTTGGTATCTGCACAAGGAAA
TGATGCAAAAGTCATATGGGGAAGTCAGCAAGACCAGACTTCTTGTTGGG
AGAAGCAAGTCCCAAAGGGAAGATGCAAGAAGGGATTGCACTAGACTGAT
CCTATTTTCTCCAAGCTCATGAGGATTGAGATGCCATGACTTCTGGGTTG
AGAGTGTTCAACTTCTCAAGTCAATGCTGCACCATTTCCTGAGACCAAGG
AGAAAGACATTGGTCTGTAGGAGAAAGATTAGCATGAGCAAAGGTTCACA
CAATAGGGCTATTAAATATGTCAGCTACATAAGGAGAATTTGTCTTAGCA
CCCCAGTAAGTCTAAAGAAAATTAGACAGGCAAACTTGCTCAGTTTTAAC
TTTGTTTCTAATGTGATTTATAGCTTACTGAACCTTTGATCATCCCATAA
TTCTCCCTTCCCCTTGGGTGAGAAAATTCTTATTACTATTCCTTATTGAA
AGGGGGAAACTTGCTAACCCCC

Query= MSMg01no110_i02.g1 MSMg01no110_i02.g1 CHROMAT_FILE:
MSMg01no110_i02.g1 PHD_FILE: MSMg01no110_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:07 2005
         (401 letters)



>mm_chr9_23533677_23534476
          Length = 800

 Score =  683 bits (353), Expect = 0.0
 Identities = 389/403 (96%), Gaps = 5/403 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattagggcatcatttcctagggtcttttggggcattgtttgagaaaaacagtcagcttt 60
           ||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 600 cattagggcatcattgcctagggtcttgtggggcattgtttgagaaaaccagtcagcttt 541

                                                                       
Query: 61  tccttactatagagatcacataaccacaaagcacaagtgcattctgccatagagagctcc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 540 tccttactatagagatcacataaccacaaagcacaagtgcattctgccatagcgagctcc 481

                                                                       
Query: 121 tctcagcccctctcatctgctttctccttggtatctgcacaaggaaatgatgcaaaagtc 180
           |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 480 tctcagcccctctcatctgcttcctccatggtatctgcacaaggaaatgatgcaaaagtc 421

                                                                       
Query: 181 atatggggaagtcagcaagaccagacttcttgttgggagaagcaagtcccaaagggaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 420 atatggggaagtcagcaagaccagacttcttgttgggagaagcaagtcccacagggaaga 361

                                                                       
Query: 241 tgcaagaagggattgcactagactgatcctattttctccaagctcatgagg--attgaga 298
           ||||||||||||||||||||||||||||||||||||||||||||||||| |  |   |||
Sbjct: 360 tgcaagaagggattgcactagactgatcctattttctccaagctcatgaagtca---aga 304

                                                                       
Query: 299 tgccatgacttctgggttgagagtgttcaacttctcaagtcaatgctgcaccatttcctg 358
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tgccatgacttctgggttgcgagtgttcaacttctcaagtcaatgctgcaccatttcctg 244

                                                      
Query: 359 agaccaaggagaaagacattggtctgtaggagaaagattagca 401
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 agaccaaggagaaagacattggtctgtaggagaaagattagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 800
Length adjustment: 9
Effective length of query: 392
Effective length of database: 791
Effective search space:   310072
Effective search space used:   310072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)