BAC Information

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BAC

Clone NameMSMg01-112D13
Chromosome9 (Build37)
Map Location 58,522,793 - 58,682,876
singlet/doubletdoublet
Overlap gene2410076I21Rik, Hcn4
Upstream geneCyp1a2, Cyp1a1, Edc3, Clk3, Arid3b, LOC665235, LOC677423, LOC100039509, Ubl7, Sema7a, Cyp11a1, 4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik, Cd276, Nptn
Downstream geneNeo1, LOC100040186, EG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112D13.T7 (MSMg01no112_d13.b1)MSMg01-112D13.TJ (MSMg01no112_d13.g1)
ACCAG324690AG324691
length742743
length of high quality
(start - end)
588 (46 - 633)504 (76 - 579)
definitionCHROMAT_FILE: MSMg01no112_d13.b1 PHD_FILE: MSMg01no112_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:19 2005CHROMAT_FILE: MSMg01no112_d13.g1 PHD_FILE: MSMg01no112_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,522,793 - 58,523,376)(58,682,491 - 58,682,876)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCAATGAGGAACGAAAGCAAGGCACGTTCAAAAGGCAGAGCAGAG
CAAAACTCTTCACGTCTCCCACCTCAGACATGTCTGAACTGCCGCTTTCC
CCTTGCACACCGCAATCCCACTAAGCGCTTCCACGAATGCGGATGCTTCC
ATCTTCTTTCTTGGTTTACTAAACCAGACTTCACTGTCTTCCCTCTCGCC
CACCCCTTCCAGTCCCACACAACTGCAAGAGAGAGTGTATCAGGCTTAGA
ATCTGTCAATAGTTTTCTATTTATTCTTGATAAAAATAAAATCTCTTCTA
TGACCTGCAAGGGAATACACAGGAAGAATGAAATAGATGAACCACACTTT
TACTGGCACATGGGAGATGCGGAGATCATAAACTTCCACCAAGTCCTAGG
AGCCTTCTAACCCTGACGCCCCTTCAGACCAGGAAGGGCCAAGGTTACAG
AACAGAGCGTCTAGTGCTGTTCTTAGCTCCCAGAAGGAAAGGGAATCTGA
GGGGGTCTCATAAAACACCAGGCGTTGCTGACATCTCCCAGCACATTCTG
AGTAGACTTTCCTGGCACTGAGTTCCCCATCCGCACATTCGCTAGCGTTC
TGTGTGCTGATCTCAGCTGACTCTGCCTCAGGCCTCAGCCTGGGAGCACT
CTCACCTCCTTGGTAGACCTTTGCATAGCTTGCCTTTGATTT
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTAGAGAAGAGGGCCTGTCCCTCG
GGGCAGGGCATGGGGCAGAGGGGTCAGAATTTGACTAGGGCCCTAGGAAG
CTAATGCAGGATTGAGGCAAGGAGGAGCTACCCCAGCAGATGTTTCAGGC
CAGAGGTCCCTGAGGAGGCCCACCACATGGGCCCCCAGAGTGAGTAGCAT
GAGGCAGTAGGGGGGTGTGCCCGCTAGTATTCTGTCAACATCACTCAAGC
CGAGGTCATCTGGGAAGAGAGAACTCCCATCAGATTGCCTGTAGGCAAAT
CTATGGGGCACTTTCTTGATTAGTGATTGATACGGGAGGACCCAGCTCAC
TGTGGGTGGGACTACCCCCAACACAATGGTCCTAGGTTACAGTAAAGAAA
ACAGACCATACAAGCCATAAGGAGCAAGCCCAGTCAGCAGCACTCCTCCA
CAGCCTCTGCATCAGCTCCTGCCTCCAGGCTCCGGCTTCAGTTCCTTCCC
TGCCTTCCATGATGAATTGTGATCACAATGCGTAAGTCAAATAAACCCTT
CCTCCCTGTGTGACTTTTGGCCATGGTATTTATCACAGCTGTAGAAAGTG
AACGGAGGGCGCTGGTGAGATGCTTCCGTTGGTTTAGAGTACCCGACTGC
TCTTCTGAAGGTCCGGAGTTCATATCCCAGCCCCCATATGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_d13.b1 MSMg01no112_d13.b1 CHROMAT_FILE:
MSMg01no112_d13.b1 PHD_FILE: MSMg01no112_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:19 2005
         (588 letters)



>mm_chr9_58522589_58523576
          Length = 988

 Score = 1067 bits (552), Expect = 0.0
 Identities = 576/584 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccaatgaggaacgaaagcaaggcacgttcaaaaggcagagcagagcaaaactct 64
           ||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 205 gaattcccaatgaggaaggaaagcaagccacgttcagaaggcagagcagagcaaaactct 264

                                                                       
Query: 65  tcacgtctcccacctcagacatgtctgaactgccgctttccccttgcacaccgcaatccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcacgtctcccacctcagacatgtctgaactgccgctttccccttgcacaccgcaatccc 324

                                                                       
Query: 125 actaagcgcttccacgaatgcggatgcttccatcttctttcttggtttactaaaccagac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actaagcgcttccacgaatgcggatgcttccatcttctttcttggtttactaaaccagac 384

                                                                       
Query: 185 ttcactgtcttccctctcgcccaccccttccagtcccacacaactgcaagagagagtgta 244
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 385 ttcactgtcttccctctcgcccaccccttccattcccacacaactgcaagagagagtgaa 444

                                                                       
Query: 245 tcaggcttagaatctgtcaatagttttctatttattcttgataaaaataaaatctcttct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcaggcttagaatctgtcaatagttttctatttattcttgataaaaataaaatctcttct 504

                                                                       
Query: 305 atgacctgcaagggaatacacaggaagaatgaaatagatgaaccacacttttactggcac 364
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 505 atgacctgcaagggaatacacaggaagaatgaaatagatgaaccatacttttactggcac 564

                                                                       
Query: 365 atgggagatgcggagatcataaacttccaccaagtcctaggagccttctaaccctgacgc 424
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 565 atgggagatgtggagatcataaacttccaccaagtcctaggagccttctaaccctaacgc 624

                                                                       
Query: 425 cccttcagaccaggaagggccaaggttacagaacagagcgtctagtgctgttcttagctc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cccttcagaccaggaagggccaaggttacagaacagagcgtctagtgctgttcttagctc 684

                                                                       
Query: 485 ccagaaggaaagggaatctgagggggtctcataaaacaccaggcgttgctgacatctccc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccagaaggaaagggaatctgagggggtctcataaaacaccaggcgttgctgacatctccc 744

                                                       
Query: 545 agcacattctgagtagactttcctggcactgagttccccatccg 588
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agcacattctgagtagactttcctggcactgagttccccatccg 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no112_d13.g1 MSMg01no112_d13.g1 CHROMAT_FILE:
MSMg01no112_d13.g1 PHD_FILE: MSMg01no112_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:19 2005
         (504 letters)



>mm_chr9_58682491_58683394
          Length = 904

 Score =  685 bits (354), Expect = 0.0
 Identities = 378/386 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   actagagaagagggcctgtccctcggggcagggcatggggcagaggggtcagaatttgac 60
           ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 386 actagagaagagggcctgtcccttggggcacggcatggggcagaggggtcagaatttgac 327

                                                                       
Query: 61  tagggccctaggaagctaatgcaggattgaggcaaggaggagctaccccagcagatgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tagggccctaggaagctaatgcaggattgaggcaaggaggagctaccccagcagatgttt 267

                                                                       
Query: 121 caggccagaggtccctgaggaggcccaccacatgggcccccagagtgagtagcatgaggc 180
           |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 266 caggccagaggtccctcaggaggcccgccacatgggcccccagagtgagtagcatgaggc 207

                                                                       
Query: 181 agtaggggggtgtgcccgctagtattctgtcaacatcactcaagccgaggtcatctggga 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 agtaggagggtgtgcccgctagtattctgtcaacatcactcaagccgaggtcatctggga 147

                                                                       
Query: 241 agagagaactcccatcagattgcctgtaggcaaatctatggggcactttcttgattagtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 agagagaactcccatcagattgcctgtaggcaaatctatggggcactttcttgattagtg 87

                                                                       
Query: 301 attgatacgggaggacccagctcactgtgggtgggactacccccaacacaatggtcctag 360
           |||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||
Sbjct: 86  attgatacgggaggacccagctcactgtgggtaggactacccctaagacaatggtcctag 27

                                     
Query: 361 gttacagtaaagaaaacagaccatac 386
           ||||||||||||||||||||||||||
Sbjct: 26  gttacagtaaagaaaacagaccatac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)