Query= MSMg01no113_d19.b1 MSMg01no113_d19.b1 CHROMAT_FILE:
MSMg01no113_d19.b1 PHD_FILE: MSMg01no113_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:36 2005
(655 letters)
>mm_chr9_72328736_72329790
Length = 1055
Score = 1176 bits (608), Expect = 0.0
Identities = 641/654 (98%), Gaps = 6/654 (0%)
Strand = Plus / Plus
Query: 6 ggaattcacttttaacactaactggagaaagaattagggaatgaaactcacttccaaaag 65
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattcacttttaacattaactggagaaagaattagggaatgaaactcacttccaaaag 265
Query: 66 catgaaagactggaccaggtcaaatacactgggatgtcacccagtctgtgattctgaagc 125
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 266 catgaaagactggaccaggtcaaatacactgggatgtcacccagtctgtgactctgaagc 325
Query: 126 ccagatgacgtttaacaggacagcaaatgctcctaggctcttgcagtcaccccctttatt 185
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ccagatgatgtttaacaggacagcaaatgctcctaggctcttgcagtcaccccctttatt 385
Query: 186 taaacactgactgggaggccaggacaagggcattaatcctgcagtggaacatgcagttta 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 taaacactgactgggaggccaggacaagggcattaatcctgcagtggaacatgcagttta 445
Query: 246 gccaatgatctcttcaggctggtttttattaattctatcttctgctccttcaattctatt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gccaatgatctcttcaggctggtttttattaattctatcttctgctccttcaattctatt 505
Query: 306 gttttccctttgaagcaattaaaagacacaagcgttaataaagatttccacattattata 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gttttccctttgaagcaattaaaagacacaagcgttaataaagatttccacattattata 565
Query: 366 atgtaattaccagcctgggtaaaccgtagactcaaagatttaattgcttactggttggta 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 atgtaattaccagcctgggtaaaccgtagactcaaagatttaattgcttactggttggta 625
Query: 426 catccaaactcttttccttttataaaaaaagccagtctcaagctgggcggcggtggtgta 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 catccaaactcttttccttttataaaaaaagccagtctcaagctgggcggcggtggtgta 685
Query: 486 cacctttaatcccagcactcgggaggcagaggcaggcggatttctgagttcaaggccagc 545
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 686 cacctttaatcccagcactcgggaggcagaggcaggtggatttctgagttcaaggccagc 745
Query: 546 ctggtctacagagtgagttccaggcagccagggctacacagagaaaccctgtgtcaaaaa 605
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 746 ctggtctacagagtgagttccaggcagccagggctacacagagaaaccctgtctaaaaaa 805
Query: 606 -accaaaaccaaaaac---aaaaccaaaaaaaagccagtctcatgaaaacatgt 655
|| |||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 806 gacaaaaaccaaaaaccaaaaaa--aaaaaaaagccagtctcatgaaaacatgt 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_d19.g1 MSMg01no113_d19.g1 CHROMAT_FILE:
MSMg01no113_d19.g1 PHD_FILE: MSMg01no113_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:37 2005
(209 letters)
>mm_chr9_72468294_72468905
Length = 612
Score = 352 bits (182), Expect = e-102
Identities = 203/214 (94%), Gaps = 9/214 (4%)
Strand = Plus / Minus
Query: 1 ttcagtagaatttcagtatgtacatggagcggtggtgaaaaaacttaaaaaaaaaaaa-- 58
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 411 ttcagtagaatttcagtatgtacatggagcggtggtgaagaaactt---aaaaaaaaatc 355
Query: 59 ctctattttccttctaacactccaatctcagcaagcaaataataaaacacgagacaactt 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ctctattttccttctaacactccaatctcagcaagcaaataataaaacacgagacaactt 295
Query: 119 cctaacatgcttatatttcttctattaaatcttaatgtcatgtgtgtgtgtg----cgtg 174
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 294 cctaacatgcttgtatttcttctattaaatcttaatgtcatgtgtgtgtgtgtgtgcgtg 235
Query: 175 cgtgtaagagatggggaggggggagggaagaaga 208
||||||||||||||||||||||||||||||||||
Sbjct: 234 cgtgtaagagatggggaggggggagggaagaaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 612
Length adjustment: 9
Effective length of query: 200
Effective length of database: 603
Effective search space: 120600
Effective search space used: 120600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
