BAC Information

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BAC

Clone NameMSMg01-113N20
Chromosome9 (Build37)
Map Location 94,085,220 - 94,085,784
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC674371, LOC384967
Downstream geneEG384968, 1190002N15Rik, EG667601, Slc9a9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113N20.T7 (MSMg01no113_n20.b1)MSMg01-113N20.TJ (MSMg01no113_n20.g1)
ACCAG325892AG325893
length717713
length of high quality
(start - end)
650 (43 - 692)561 (67 - 627)
definitionCHROMAT_FILE: MSMg01no113_n20.b1 PHD_FILE: MSMg01no113_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:25 2005CHROMAT_FILE: MSMg01no113_n20.g1 PHD_FILE: MSMg01no113_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTCACACTTACTTGGTATCCTATTTTCATTGGTAACCTTATGTTTTCT
TGGCTATAACATGGAACTTTCTGTTATTTTCAGCTTGGAGCAAATCAGAA
ATTTCTAATGAGTTTTCTTGATATTTACTTTGACCCATTTCAGGTCAGCT
TATTGCTTTTTTCTCCTATTCCAAAGGCAAAGTGAGAGGAGGAAAACCTC
CTCTTGCTTATTAGGACTTCAGTGAGTAATCTCTACTCAAGGATTTCTAA
TTAAAATGTAAAGATCATTAGTATGAGTCATAATAGAGGCCTTTCTGGTG
GTTCCAGACACACTCTTGCATCTACCTTGCTGAACAATTGATGCTCTTGG
CACAGTTTTTCAGTACCAGAGGGCCTTGACTGGTACCCAAGCCTCTGCTT
GAGGGCAGGCAGAGAAGATGCAGGCCTGGAGGAACCAAGAAGAGCAACAA
ATTGTAAACTCAGCATTTCCTTTGCTGCTATTACCAGTTCCCCAGAACAA
TGGTACTAAAAGAGAAAGAGGAAGAGGCCACTAAGAGGCATTATACATTT
GCAATTTTACATTATACATTTTATAATTTTGAGAGAAGACAGAAATAAGT
GAGATGAATACTAACAGATGTCAGGTTAACTCTTTTTGTTGTTTTATATT
CCATTTCTGTGCTTCAG
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTAGTGTCAAAAATTAGCTGAAGAATGTTTATCCA
TTAGTAGATCACTGTTTTATTTACCCAAAATGAAATGTGGATATAACATA
TGTCATCTCCCAAATCTGCTGAATTAAATATGCTCAAAACTCTACTTAAG
AAATTTAAAAGATGCTAAGTTATTTTCTTATTAGTCTCACAGTCTGACAC
TGCACATCTCCAGCTGGAAGGAACTGAAAACCTGACACCAAGGTGCCAGA
CTGAAAGGCAGATGGTGATTTCTAGCAACTAATGCCCGGCTGCTGGTGAA
TAGTGAAAAAATTTATCTGGGACCACCTTATACCTTGATGAATAAAGCAT
CCCACATTAAATTTCTGGAGCTTTCTATAAGAAAAAAATCATATTTATTT
ACAGAATAGAGGAAAGGGTGAAGTGTGTGTGAAGTGTGGGACCACGTAGA
GACTAGAGGGAATTCTCTAATCCATTTCTTTAGACAGGCTGGCAGCCCTT
TCTTTAGAGAAAAAAAAAACTTTGCAGGGTTTTTAAATATTTAATATACA
TGACTGCTTTATAGCTCAAGGAAAACCTGTGGTTCTTTATTGCCAAATAT
TTCAGAGCTTATCTCAACTTCTATGGAATTTTTTTAAAAAATGTGTATTA
TTTCTAAACTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_n20.g1 MSMg01no113_n20.g1 CHROMAT_FILE:
MSMg01no113_n20.g1 PHD_FILE: MSMg01no113_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:25 2005
         (561 letters)



>mm_chr9_94085020_94085984
          Length = 965

 Score = 1058 bits (547), Expect = 0.0
 Identities = 559/565 (98%), Gaps = 4/565 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagtgtcaaaaattagctgaagaatgtttatccattagtagatcactgttttatttaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagtgtcaaaaattagctgaagaatgtttatccattagtagatcactgttttatttaccc 260

                                                                       
Query: 61  aaaatgaaatgtggatataacatatgtcatctcccaaatctgctgaattaaatatgctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaatgaaatgtggatataacatatgtcatctcccaaatctgctgaattaaatatgctca 320

                                                                       
Query: 121 aaactctacttaagaaatttaaaagatgctaagttattttcttatt----agtctcacag 176
           ||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||
Sbjct: 321 aaactctacttaagaaatttaaaagatgctaagttattttcttatttattagtctcacag 380

                                                                       
Query: 177 tctgacactgcacatctccagctggaaggaactgaaaacctgacaccaaggtgccagact 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgacactgcacatctccagctggaaggaactgaaaacctgacaccaaggtgccagact 440

                                                                       
Query: 237 gaaaggcagatggtgatttctagcaactaatgcccggctgctggtgaatagtgaaaaaat 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaaggcagatggtgatttctagcaactaatgcccggctgctggtgaatagtgaaaaaat 500

                                                                       
Query: 297 ttatctgggaccaccttataccttgatgaataaagcatcccacattaaatttctggagct 356
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 ttatctgggaccaccttataccttgatgaataaagcatcccacattagatttctggagct 560

                                                                       
Query: 357 ttctataagaaaaaaatcatatttatttacagaatagaggaaagggtgaagtgtgtgtga 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctataagaaaaaaatcatatttatttacagaatagaggaaagggtgaagtgtgtgtga 620

                                                                       
Query: 417 agtgtgggaccacgtagagactagagggaattctctaatccatttctttagacaggctgg 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 agtgtgggaccacgtagagactagagggaattctctaatccatttctttagacgggctgg 680

                                                                       
Query: 477 cagccctttctttagagaaaaaaaaaactttgcagggtttttaaatatttaatatacatg 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagccctttctttagagaaaaaaaaaactttgcagggtttttaaatatttaatatacatg 740

                                    
Query: 537 actgctttatagctcaaggaaaacc 561
           |||||||||||||||||||||||||
Sbjct: 741 actgctttatagctcaaggaaaacc 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 965
Length adjustment: 10
Effective length of query: 551
Effective length of database: 955
Effective search space:   526205
Effective search space used:   526205
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)