Query= MSMg01no113_p23.b1 MSMg01no113_p23.b1 CHROMAT_FILE:
MSMg01no113_p23.b1 PHD_FILE: MSMg01no113_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:35 2005
(397 letters)
>mm_chr9_73171366_73172164
Length = 799
Score = 698 bits (361), Expect = 0.0
Identities = 382/391 (97%), Gaps = 6/391 (1%)
Strand = Plus / Plus
Query: 7 gaattctttc-atacttcttgcag-acatacatgctgtccctgctctcactggtctgggc 64
|||||||||| |||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct: 207 gaattctttcaatacttcttgtagcacatacatgctatccctgctctcactggtctgggc 266
Query: 65 aatgctcttttcttcatgttcatagataggagtctggtggtccattttagtggctctata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aatgctcttttcttcatgttcatagataggagtctggtggtccattttagtggctctata 326
Query: 125 atgtttcactgtctttgtgcttgaatagtttttgagatctctgcccagtgtatcccataa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atgtttcactgtctttgtgcttgaatagtttttgagatctctgcccagtgtatcccataa 386
Query: 185 cccagatttctcttgatatagcacacattctctgctttttcacagtgtgttctagttttg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cccagatttctcttgatatagcacacattctctgctttttcacagtgtgttctagttttg 446
Query: 245 tgattttttttaattggggggaggttgatttaaaaagtgtgcatgtgtgtgtgtgtgtgt 304
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tgatttttttttattggggggaggttgatttaaaaagtgtgcatgtgtgtgtgtgtgt-- 504
Query: 305 gtacattcttgagtgcctgactagtatacacatggaggtcccaggacaatttgtgagaat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 --acattcttgagtgcctgactagtatacacatggaggtcccaggacaatttgtgagaat 562
Query: 365 cacctctgtcttcttaccatgtgatcctgag 395
|||||||||||||||||||||||||||||||
Sbjct: 563 cacctctgtcttcttaccatgtgatcctgag 593
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 799
Length adjustment: 9
Effective length of query: 388
Effective length of database: 790
Effective search space: 306520
Effective search space used: 306520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_p23.g1 MSMg01no113_p23.g1 CHROMAT_FILE:
MSMg01no113_p23.g1 PHD_FILE: MSMg01no113_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:35 2005
(590 letters)
>mm_chr9_73227400_73228389
Length = 990
Score = 955 bits (494), Expect = 0.0
Identities = 566/590 (95%)
Strand = Plus / Minus
Query: 1 tcccttcacaactgacatttctatacctacaatcttatatcttaaggggtaaaatgaata 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 729 tcccttcacaactgacatttctatacctacaatcttacatcttaaggggtaaaatgaata 670
Query: 61 taaatgaaatactgcttcttattaaaaattagaaactttcttctgcttaagtaagaactc 120
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 669 taaatgaaatactgcttcttattaaaaattagaaactttcctctgcttaaataagaactc 610
Query: 121 agacaagcccccagcccttcctggtaactcttccacacatagagtttataattattttag 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 609 agacaagcccccagcccttcctggtaactcttccacacatagagtttataattattgtag 550
Query: 181 aatggttttattggaactaaaatggccacatatagcctaaagccatcactcatacttaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aatggttttattggaactaaaatggccacatatagcctaaagccatcactcatacttaat 490
Query: 241 tatagcaaatcaaacttatctttagtccacatagtttgttaccagtcccaaacaactgtc 300
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 489 tatagcaaatcaaacttatctttagtccacatagtttgttaccagttccaaaggactgtc 430
Query: 301 atgtgatccaacttaattctcttaagttttcagaaaaatcttattagacacattttacaa 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 429 atgtgatccaacttaattcttttaagttttcagaaaaatcttattagacacattttacaa 370
Query: 361 atagggataagaaggccggagaagatgtcattttcccatggatcatatttattataattc 420
|||||||||| |||||| |||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 369 atagggataataaggccagagaagatgtcatttttccatggatcatatttactataattc 310
Query: 421 tgtgtcacagaatataaactccaaaacatgactcctgttgtcctacatagactaatacac 480
| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 309 tatgtcactgaatataaactccaaaacatgactcctgttgtcctacatagactgatacat 250
Query: 481 ataataccctgccaagaggagggggtgatagcttggtcaataaagtacctaaagacctga 540
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 249 gtaataccctgccaagaggagtgggtgatagctcagtcaataaagtacctaaagacctga 190
Query: 541 attcagatcccatcaccgacttaaaaagtggtgtgcacctgtaatcacag 590
||||||| ||||| || ||||||||||||||||||||||||| |||||||
Sbjct: 189 attcagaccccattactgacttaaaaagtggtgtgcacctgtgatcacag 140
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
