BAC Information

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BAC

Clone NameMSMg01-114L03
Chromosome9 (Build37)
Map Location 50,062,339 - 50,062,836
singlet/doubletsinglet
Overlap genenone
Upstream geneEG235327, Drd2, Ankk1, Ttc12, Ncam1, EG667975, LOC100042806
Downstream geneLOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b, Snf1lk2, Layn, 4833427G06Rik, Btg4, LOC100042825, Pou2af1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114L03.T7 (MSMg01no114_l03.b1)MSMg01-114L03.TJ (MSMg01no114_l03.g1)
ACCAG326513AG326514
length716732
length of high quality
(start - end)
496 (44 - 539)567 (75 - 641)
definitionCHROMAT_FILE: MSMg01no114_l03.b1 PHD_FILE: MSMg01no114_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:26 2005CHROMAT_FILE: MSMg01no114_l03.g1 PHD_FILE: MSMg01no114_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTCTATTCCCTCTATTGACAGCCTAGTTTGGATTAATCCTCAAGGG
AAAGAGCAATGTATACCTTTGTTTTGCTTTGTTTTGTTCTGTTGTCTTGT
TAATAAAACGTATCCTGTTAAATAGTAATCTTACACTGGGCAGTTCTAAA
AGTCATGTCTCCCAGGATCAAATACTACTCAGATCCCATTCTTCACATCA
AAAATCATGGAATAAAGTAGATTTAAAAGAACTAAACAATGGAGGGGAAA
GGAATAAAAGTAACCATGCTCATCTAAGAGGAAAGAGGCCTCCTTCTTCC
TCCTTTTCACATGATATTAACTCTAAGGAAAGGGAAGTTATGGCATGTTC
CTTCCTTTAAAAATCTGTGTGTGGCCAGAGACACAGTAGATGGAGCCCAA
AGCTGGCTATGAGGGAGGGGGGTCCATCCTCAAAGATCTTCAAGCCTGCT
AATATCTAACTGCTTACCTAACAAATGAACAGCCATGCCCAGGATAGTTC
AGTGTGCTGTGGCACACCAAATTTGGTATTCCCTTCTCACGGTGCTAACA
TGCTGTCCTATGTCACATTCTGTAATGATAGATCAGAGTTGCTCAATGTA
TCAACCACTAGTATAACTGAAAGGCCGAATTCCTCATTAAATTTCATTTA
ACTGAATTTAAACCTT
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAAACTCAAGAAG
AATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGAAGTGGGAACAA
AACACCCATGGAAGGAGTTACAGAGACAACGCTTGGAGCTGAGACGAAAG
GATGGACCATGTAGAGACTGCCACATCCAGGGATCCACCCCATAATCAGC
TTTCAAATGCTGACACCATTGCATACACTAGCAAGATTTTATCGAAAGGA
CCCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACA
GAAGTGGATGCTCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAATG
GAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATA
GGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAG
CTGCATATGTATCAAAAGATGGCCTAGCCGGCCATCACTGGAAAGAGAGG
CCCATTGGACACACAAACTGTATATGCCCCAGTACAGGGGAACGCCAGGG
CCAAAAAAAAAAAAATGGGAATGAGTGAGTAGGGAAGTGGGCGGGGAGAA
GGCCCGTTCCCCTCTCNCCCTCCCCCTTTTTTCTCTCCCCCTCCCCCTCC
TCTCTTTCCCCTCTCCGCCTTCCCCCTCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_l03.b1 MSMg01no114_l03.b1 CHROMAT_FILE:
MSMg01no114_l03.b1 PHD_FILE: MSMg01no114_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:26 2005
         (496 letters)



>mm_chr9_50062136_50063036
          Length = 901

 Score =  924 bits (478), Expect = 0.0
 Identities = 491/498 (98%), Gaps = 5/498 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttctattccctctattgacagcctagtttggattaatcctcaagggaaagag 63
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttctattcattctattgacagcctagtttggattaatcctcaagggaaagag 263

                                                                       
Query: 64  caatgtatacctttgttttgctttgttttgttctgttgtcttgttaataaaacgtatcct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caatgtatacctttgttttgctttgttttgttctgttgtcttgttaataaaacgtatcct 323

                                                                       
Query: 124 gttaaatagtaatcttaca-----ctgggcagttctaaaagtcatgtctcccaggatcaa 178
           |||||||||||||||||||     ||||||||||||||||||||||||||||||||||||
Sbjct: 324 gttaaatagtaatcttacagtggtctgggcagttctaaaagtcatgtctcccaggatcaa 383

                                                                       
Query: 179 atactactcagatcccattcttcacatcaaaaatcatggaataaagtagatttaaaagaa 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atactactcagatcccattcttcacatcaaaaatcatggaataaagtagatttaaaagaa 443

                                                                       
Query: 239 ctaaacaatggaggggaaaggaataaaagtaaccatgctcatctaagaggaaagaggcct 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctaaacaatggaggggaaaggaataaaagtaaccatgctcatctaagaggaaagaggcct 503

                                                                       
Query: 299 ccttcttcctccttttcacatgatattaactctaaggaaagggaagttatggcatgttcc 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccttcttcctccttttcacatgatattaactctaaggaaagggaagttatggcatgttcc 563

                                                                       
Query: 359 ttcctttaaaaatctgtgtgtggccagagacacagtagatggagcccaaagctggctatg 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttcctttaaaaatctgtgtgtggccagagacacagtagatggagcccaaagctggctatg 623

                                                                       
Query: 419 agggaggggggtccatcctcaaagatcttcaagcctgctaatatctaactgcttacctaa 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agggaggggggtccatcctcaaagatcttcaagcctgctaatatctaactgcttacctaa 683

                             
Query: 479 caaatgaacagccatgcc 496
           ||||||||||||||||||
Sbjct: 684 caaatgaacagccatgcc 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 901
Length adjustment: 10
Effective length of query: 486
Effective length of database: 891
Effective search space:   433026
Effective search space used:   433026
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)