BAC Information

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BAC

Clone NameMSMg01-114M19
Chromosome9 (Build37)
Map Location 30,573,080 - 30,573,434
singlet/doubletsinglet
Overlap genenone
Upstream geneHnt, Snx19, LOC666478
Downstream geneAdamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558, EG666576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114M19.T7 (MSMg01no114_m19.b1)MSMg01-114M19.TJ (MSMg01no114_m19.g1)
ACCAG326593AG326594
length778752
length of high quality
(start - end)
248 (40 - 287)355 (77 - 431)
definitionCHROMAT_FILE: MSMg01no114_m19.b1 PHD_FILE: MSMg01no114_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:35 2005CHROMAT_FILE: MSMg01no114_m19.g1 PHD_FILE: MSMg01no114_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCG
CTCATCTGTTTTACCAGTGTGTGGAGGTGTGGAGGTGGTTTTCAGGGTTT
TCTACATGTAAGGTCCTATCCCATGAAGCAGAGATAATGATACTTTCCCC
TTCCCAGCAGGATTGTGCTTTACTTCTTTTCTTTGTCTTACCTTATCTCT
GAACTACAGCTTTCAATACTATGTTGAATGAATGTAGTGAAATCAGTCAC
TTATGTATCATTTCTGATCTTCAAAGAAAATCTCACAGCCTATTACAATC
AGTGTGAAACCTCAGTTGCGGTCATTGCATATACAGGATTTTCCTCACAC
CGAAGGATTTTGGCTTCTATTCCCCACCTACTTGATCATTCCCGTTAGTA
GCCCTTGATACCCCCCCCCCACCTATTTTACTTATGCCTTCCTTGCCCGC
TCTCCGCCTTTTTGCTTATTCCCCCATTTTAGGCTTGCAACTTCCCTTCG
CTCTCAACCCTCTGTTTTTTTTCCCCCCCTTTTCCCTCCCCTCTCCTCCC
TTTTCCTCCCTTCCTTCCTTCGCCTTCCCTTTCTCTTCCCTTCTTCTTCC
CCTTCTCCTCTCTACTCTTCCCTTCCCTCCTTTTTCCTCCTCTCCCCCCT
TTTCCCCCTTCCTCCCGCCTTTTTCTTTCTCTCTCCCCCCTTTTTTCTTC
TTCCCCCTCCCCCCCTTTACGCTTTCTCCTCCTCCCTTTCTCTATCCTCC
CCCCCCCGCTTCCTCTTCTTTCTTCTTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCGCTTTAATGAAGTCCATTCC
CTTAGACTCCTGGGGTTTATCCTGGAGATGTAGATGTGATTTGCTTCTCA
CAGTCCCCTTTGAAGATGGTTTTCTGTTGAATAAATCTTTGAGGATATTG
TTCCTAGCTCAAGGTCTGACAAATGGTAGAACTGGCAGGTATTTGTTCTG
TGGATGAAAGAGTGATGCTGCAGAGACACAGAGGAACCTAGAATTAAGGG
AAAGTTCCCTGACCTTGGGTAGCCTTTGTGCAGTCTGGGAGCTCTTTCTC
TGTGCAGGTCCTGTATCAGGTATGCCAGATGAGCTCAGGCCTCCAGAGAT
GGTTCAGTATAGCGGCAGGGGGATGGGGGGTGGGGGAGAGCCCCCCCCCC
CCCNCCCCCCCCCCCCCCCCTCCNCCCCCCCNNNCCCCCCCCCCCNCCCC
CCCCNNCCCCCCCCCCCCCCCCCCCTCCCCCCCCCNCCCCCNNCCCCCCC
CCCCCCCCCCTCCCCCCCCCCCCNCNNNCCCCCCNCCCCCCNCCCCCCNC
CTCCNCCCNNNCCCCNCCCTCCCTCCCCCCCCCCTTTTTTCCCCTTTCTT
TTCTTTTTTCTCTCCCCTCTTCCCCCTCCTTTTTTTCCCCCCCTTTTCTT
TTTCCCCCCCCCTCCTTTTCTCCCTCTCCTTCCTTTTCCCCCCTTTCCTC
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_m19.g1 MSMg01no114_m19.g1 CHROMAT_FILE:
MSMg01no114_m19.g1 PHD_FILE: MSMg01no114_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:35 2005
         (355 letters)



>mm_chr9_30572880_30573634
          Length = 755

 Score =  663 bits (343), Expect = 0.0
 Identities = 352/355 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catcgctttaatgaagtccattcccttagactcctggggtttatcctggagatgtagatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 catcgctttaatgaagtccattcccttagactcctggggtttatcctggagatgtagatg 496

                                                                       
Query: 61  tgatttgcttctcacagtcccctttgaagatggttttctgttgaataaatctttgaggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tgatttgcttctcacagtcccctttgaagatggttttctgttgaataaatctttgaggat 436

                                                                       
Query: 121 attgttcctagctcaaggtctgacaaatggtagaactggcaggtatttgttctgtggatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 attgttcctagctcaaggtctgacaaatggtagaactggcaggtatttgttctgtggatg 376

                                                                       
Query: 181 aaagagtgatgctgcagagacacagaggaacctagaattaagggaaagttccctgacctt 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 375 aaagagtgatgctgcagagacacaaaggaacctagaattaagggaaagttccctgacctt 316

                                                                       
Query: 241 gggtagcctttgtgcagtctgggagctctttctctgtgcaggtcctgtatcaggtatgcc 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 315 gggtagcctttgtgcagtctgggagctctttctctgtgcaggtcctatatcaggtatgcc 256

                                                                  
Query: 301 agatgagctcaggcctccagagatggttcagtatagcggcagggggatggggggt 355
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 255 agatgagctcaggcctccagagatggttcagtatagcggcagggggctggggggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)