BAC Information

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BAC

Clone NameMSMg01-114P12
Chromosome2 (Build37)9 (Build37)
Map Location 101,087,032 - 101,087,503111,720,405 - 111,721,063
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042907, LOC241572, LOC668705
Downstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik, LOC100043302, Commd9, Ldlrad3, LOC674202
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114P12.T7 (MSMg01no114_p12.b1)MSMg01-114P12.TJ (MSMg01no114_p12.g1)
ACCAG326720AG326721
length703735
length of high quality
(start - end)		476 (44 - 519)659 (75 - 733)
definitionCHROMAT_FILE: MSMg01no114_p12.b1 PHD_FILE: MSMg01no114_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:47 2005CHROMAT_FILE: MSMg01no114_p12.g1 PHD_FILE: MSMg01no114_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:47 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(101,087,032 - 101,087,503)(111,720,405 - 111,721,063)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAATATAAAATCTTTCTAAATTCCATTTTACTTTTATCAGTATACACC
AACAAACAAACAACAAAACAGGAGTTTGCGTCACCTACTTATTCTGAATT
TATTTGCTTAATTCCACATTCCATAGATCTTTAAGAGGAAATGCTAGGAA
TAAAGCCTGGCCATCACCCAGCGTGATAATATTTATACTTAATTAAAAAA
ATAACAGCAATGTTATTTACAGTGTGACGTGAGCTAATGCAATAGAAGGA
AGAGTGTCACTGGGCTACTCTTCCTGCTTGCCTGTCTTGGAGTCCAGACT
GGTGTCTGTGTGCTCCCTCCCGCAGCTTTCATCTCACAACTACAGTAAGT
GACACAGCCTAAGTACTACCAGGAATTCATGTATCACTCAGCACCTCTGG
CTCTCATCTTACAATCATCCAGGGGAAAGGGGCTTAGACATTCACTGAGT
TGAGTAACTTAAGATGACAACGGAAGCACTGTCCTGGGCCTAGTCTTAAG
ATAATGTCCCCTGTGGGAACTGAAGGAGGCAGACATGCTTATGGGCTGCT
GCCAGCAGGGAAAGGTTTTTTCCCATTCTAAGTAGCTTAGGCAGGTTTAT
TCAGACATCTGCTCTCCCAGCAAGAGCAGTCCTGCTAACGCTGAGTTTTC
ATN

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCTGTGATGCTGAGTTGGCTACTGG
GTACCCAAGGGCATCCTCCTGTGTACGACCTTCTGCTCAAAGATCCTTTT
TGGAATGTGTGGATGGAGCTTGAACATTCTTTGAGGTGTCTACACTCATG
TGTCCTAGAGGGCACGGGAGCCATTTGCATCACGGCTGTGTGTCTTTAGT
GTGGAGCCATTGTAGAGGTTTAATGAGTTAAATTGAAAAGACTAAGCCAT
TGCTCACTGTCTGTATTGCCTGTGATGTGAATTTGATTGTTGGAAGAGAC
TGGATCAAGAAAGACTCTTGAGTTTTTAATCATCAGAGGACTGTTGTAAT
CAATAGGACTCTTAGAAGACAATAAATTCAAGGACACTGTATGAGAAAAC
TCAGGGTGGAATGTGCTTGCTCCACGCTGATGAAAATTCCCCATTTATCT
TTTGAATTTAATTGAAATAACATTTTAAATAATTGTCAGGCAAGCTTTGT
TCTGTTCCTGTAACCCACAGCCATGGCTATTACTCAACTTCAGGATGAAT
TATTCCCAGCTTTCCCTTTGTCAGTGGGGGGAAATACAGCAAACAAGCAC
AATAATTATTTAAAGGAACCCTGGGGCCAATTAAGCTCTTTCTATTACTG
CCATAGGAGGAGTGAGCGAAACAGGTGGAAAGTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_p12.b1 MSMg01no114_p12.b1 CHROMAT_FILE:
MSMg01no114_p12.b1 PHD_FILE: MSMg01no114_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:47 2005
         (476 letters)



>mm_chr2_101086828_101087703
          Length = 876

 Score =  866 bits (448), Expect = 0.0
 Identities = 466/472 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatataaaatctttctaaattccattttacttttatcagtatacaccaacaaac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatataaaatctttctaaattccattttacttttatcagtatacaccaacaaac 264

                                                                       
Query: 65  aaacaacaaaacaggagtttgcgtcacctacttattctgaatttatttgcttaattccac 124
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 265 aaacaacaaaacaggagtttgcgtcacgtacttattctgaatttatttgcttaattccac 324

                                                                       
Query: 125 attccatagatctttaagaggaaatgctaggaataaagcctggccatcacccagcgtgat 184
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attccataggtctttaagaggaaatgctaggaataaagcctggccatcacccagcgtgat 384

                                                                       
Query: 185 aatatttatacttaattaaaaaaataacagcaatgttatttacagtgtgacgtgagctaa 244
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatatttatacttaattcaaaaaataacagcaatgttatttacagtgtgacgtgagctaa 444

                                                                       
Query: 245 tgcaatagaaggaagagtgtcactgggctactcttcctgcttgcctgtcttggagtccag 304
           ||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 445 tgcaatacaaggaagagtgtcactgggctattcttcctgcttgcctgtcttggaatccag 504

                                                                       
Query: 305 actggtgtctgtgtgctccctcccgcagctttcatctcacaactacagtaagtgacacag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 actggtgtctgtgtgctccctcccgcagctttcatctcacaactacagtaagtgacacag 564

                                                                       
Query: 365 cctaagtactaccaggaattcatgtatcactcagcacctctggctctcatcttacaatca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cctaagtactaccaggaattcatgtatcactcagcacctctggctctcatcttacaatca 624

                                                               
Query: 425 tccaggggaaaggggcttagacattcactgagttgagtaacttaagatgaca 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tccaggggaaaggggcttagacattcactgagttgagtaacttaagatgaca 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no114_p12.g1 MSMg01no114_p12.g1 CHROMAT_FILE:
MSMg01no114_p12.g1 PHD_FILE: MSMg01no114_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:47 2005
         (659 letters)



>mm_chr9_111720205_111721263
          Length = 1059

 Score = 1266 bits (655), Expect = 0.0
 Identities = 658/659 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctgtgatgctgagttggctactgggtacccaagggcatcctcctgtgtacgaccttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctgtgatgctgagttggctactgggtacccaagggcatcctcctgtgtacgaccttct 260

                                                                       
Query: 61  gctcaaagatcctttttggaatgtgtggatggagcttgaacattctttgaggtgtctaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctcaaagatcctttttggaatgtgtggatggagcttgaacattctttgaggtgtctaca 320

                                                                       
Query: 121 ctcatgtgtcctagagggcacgggagccatttgcatcacggctgtgtgtctttagtgtgg 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 ctcatgtgtcctagagggcacgggagccatttgcatcatggctgtgtgtctttagtgtgg 380

                                                                       
Query: 181 agccattgtagaggtttaatgagttaaattgaaaagactaagccattgctcactgtctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agccattgtagaggtttaatgagttaaattgaaaagactaagccattgctcactgtctgt 440

                                                                       
Query: 241 attgcctgtgatgtgaatttgattgttggaagagactggatcaagaaagactcttgagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgcctgtgatgtgaatttgattgttggaagagactggatcaagaaagactcttgagtt 500

                                                                       
Query: 301 tttaatcatcagaggactgttgtaatcaataggactcttagaagacaataaattcaagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttaatcatcagaggactgttgtaatcaataggactcttagaagacaataaattcaagga 560

                                                                       
Query: 361 cactgtatgagaaaactcagggtggaatgtgcttgctccacgctgatgaaaattccccat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cactgtatgagaaaactcagggtggaatgtgcttgctccacgctgatgaaaattccccat 620

                                                                       
Query: 421 ttatcttttgaatttaattgaaataacattttaaataattgtcaggcaagctttgttctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttatcttttgaatttaattgaaataacattttaaataattgtcaggcaagctttgttctg 680

                                                                       
Query: 481 ttcctgtaacccacagccatggctattactcaacttcaggatgaattattcccagctttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcctgtaacccacagccatggctattactcaacttcaggatgaattattcccagctttc 740

                                                                       
Query: 541 cctttgtcagtggggggaaatacagcaaacaagcacaataattatttaaaggaaccctgg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cctttgtcagtggggggaaatacagcaaacaagcacaataattatttaaaggaaccctgg 800

                                                                      
Query: 601 ggccaattaagctctttctattactgccataggaggagtgagcgaaacaggtggaaagt 659
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggccaattaagctctttctattactgccataggaggagtgagcgaaacaggtggaaagt 859


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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