Query= MSMg01no115_a22.b1 MSMg01no115_a22.b1 CHROMAT_FILE:
MSMg01no115_a22.b1 PHD_FILE: MSMg01no115_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:54 2005
(477 letters)
>mm_chr9_120721433_120722307
Length = 875
Score = 839 bits (434), Expect = 0.0
Identities = 463/474 (97%), Gaps = 4/474 (0%)
Strand = Plus / Plus
Query: 5 gaattcataatgatggtaatgactgaaggagggaaacaactcgtgtgtccactgggaagg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcataatgatggtaatgactgaaggagggaaacaactcgtgtgtccactgggaagg 264
Query: 65 gattggcagtggccgtattactcataaagcaaagaggaaaatagcagcctgttaggagga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gattggcagtggccgtattactcataaagcaaagaggaaaatagcagcctgttaggagga 324
Query: 125 aaatggccaaatccatcataacaacttcattctgaggagcacgcttcaataagaaaaaga 184
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 325 aaatggccaaatccatcataacaacttcattctgaggagcacgcttc---aagaaaaaga 381
Query: 185 catgtgtcacataaagagattctgagacccagaagacagccatggcgacatgccactcag 244
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 382 cacgtgtcacataaagagattctgagacccagaagacagccgtggcgacatgccactcag 441
Query: 245 gtgtccagtcaagagagaactacccattcagccatcagaagttcagggagctgacatctc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gtgtccagtcaagagagaactacccattcagccatcagaagttcagggagctgacatctc 501
Query: 305 ttgcttcagagcattgtgaagccattacactgttccagttgtgaccttgctctttctgga 364
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 502 ttgcttcagagcaccgtgaagccactacactgttccagttgtgaccttgctctttctgga 561
Query: 365 gtctcaagtcaaaagctgaaggtgactggcatatgaaca-tctggctatctctgcccaag 423
|||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 562 gtctcacgtcaaaggctgaaggtgactggcatatgaacaatctggctatctctgcccaag 621
Query: 424 gaggcaggcactcctgcagatggccatgttgattctggaaagggagggaggagg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gaggcaggcactcctgcagatggccatgttgattctggaaagggagggaggagg 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 875
Length adjustment: 10
Effective length of query: 467
Effective length of database: 865
Effective search space: 403955
Effective search space used: 403955
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no115_a22.g1 MSMg01no115_a22.g1 CHROMAT_FILE:
MSMg01no115_a22.g1 PHD_FILE: MSMg01no115_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:54 2005
(633 letters)
>mm_chr9_120873395_120874427
Length = 1033
Score = 1108 bits (573), Expect = 0.0
Identities = 618/633 (97%), Gaps = 2/633 (0%)
Strand = Plus / Minus
Query: 1 atggcactgtccctcggtggcagccctatccgctggactgcagctttcatgtggcacccc 60
||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||
Sbjct: 832 atggcactgtccctcggtggcagccctgtccgatggactgcagctttcatgcggcacccc 773
Query: 61 accacccaccccattatgcacaaacagctatttccttgcctttgggggtgccacccgtgg 120
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 772 accacccaccccattacgcacaaacagctatttccttgcc-ttgggggtgccacccgtgg 714
Query: 121 tctaacgttctcttcaggggctgctgagtgccatgcttttctttgttcctagccaggttt 180
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 713 tctaacgttctcttcaggggctgccgagtgccatgtttttctttgttcctagccaggttt 654
Query: 181 acatgc-gtctcaaacaaaacaaagtttctgttttaagctcctaattgcccacttgcagt 239
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 acatgcattctcaaacaaaacaaagtttctgttttaagctcctaattgcccacttgcagt 594
Query: 240 ctcctagtattatcccacagtgcatggaggtgagagcccacagtggacaggagctggcag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ctcctagtattatcccacagtgcatggaggtgagagcccacagtggacaggagctggcag 534
Query: 300 cgcagagaggaaggggttagagtcagggtggagagagagatttaggaaccaggggctggg 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tgcagagaggaaggggttagagtcagggtggagagagagatttaggaaccaggggctggg 474
Query: 360 caggctggctacacctgtccaccaactcgcacaggcagactcaaatggctggtggtgccc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 caggctggctacacctgtccaccaactcgcacaggcagactcaaatggctggtggtgccc 414
Query: 420 agggcctgggctgaggtgcagtggagaggcccagcctcattaggaggtttgacccctata 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 agggcctgggctgaggtgcagtggagaggcccagcctcattaggaggtttgacccctata 354
Query: 480 cattacttttctcttccacagctcacccgtcgacactgtcgtggcttccttggccctgga 539
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 353 cattacttttctcttccacagctcacccgtcgacactatcgtggcttccttggccctgga 294
Query: 540 actcctccaggctgttgggcattagacacggccatcctgtggcacagtgtggtcagatcc 599
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 actcctccaggcagttgggcattagacacggccatcctgtggcacagtgtggtcagatcc 234
Query: 600 cacaccattctttctcaccggcctcaagtggag 632
|||||||| |||||||||| | |||||||||||
Sbjct: 233 cacaccatcctttctcaccagtctcaagtggag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
