Query= MSMg01no115_p03.b1 MSMg01no115_p03.b1 CHROMAT_FILE:
MSMg01no115_p03.b1 PHD_FILE: MSMg01no115_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:02 2005
(392 letters)
>mm_chr9_48918334_48919125
Length = 792
Score = 706 bits (365), Expect = 0.0
Identities = 383/389 (98%)
Strand = Plus / Minus
Query: 4 ggaattccacaaagaaaaagggacagctggggtccgtcactctgcctccagtgcatttct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ggaattccacaaagaaaaagggacagctggggtccgtcactctgcctccagtgcatttct 421
Query: 64 aagagtggagctgaggcttctgcctgcccccaccctcgaggcttcaggcagtttgaagga 123
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 420 aagagtggagctgaggcttctgcctgcccacaccctcgaggcttcaggcagtttgaagga 361
Query: 124 gcctaagccggacaaagacctcccagcttgtgctgcctggggtatagtgagaggtgtggt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gcctaagccggacaaagacctcccagcttgtgctgcctggggtatagtgagaggtgtggt 301
Query: 184 ccattctgagactctttctttgggatgctctcatttgcttttctgctgagacagcagaat 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 300 ccattctgagactctttctttgggatgctctcatttgcttttctgctgagacagaagaat 241
Query: 244 tatgcaagtcaagcatagccacatgggtcccctgacctggtgtcatgagcctggccccaa 303
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 240 tatgcaagtcaagcatagccacatgggtcccctgacctggtatcgtgagcctggccccag 181
Query: 304 attggctgtttattggtcatactgccttggataaggctgtttaacctcgctgagcctcag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 attggctgtttattggtcatactgccttggataaggctgtttaacctcgctgagcctcag 121
Query: 364 tttccctacctttaaaagtaaactatggt 392
||||||||||||||||||| |||||||||
Sbjct: 120 tttccctacctttaaaagtgaactatggt 92
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space: 299889
Effective search space used: 299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no115_p03.g1 MSMg01no115_p03.g1 CHROMAT_FILE:
MSMg01no115_p03.g1 PHD_FILE: MSMg01no115_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:02 2005
(559 letters)
>mm_chr9_48760332_48761290
Length = 959
Score = 988 bits (511), Expect = 0.0
Identities = 543/559 (97%), Gaps = 9/559 (1%)
Strand = Plus / Plus
Query: 1 tttgtcttctagtttctataaagagctggcattacaagtgtgcctgactgcacatggcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtcttctagtttctataaagagctggcattacaagtgtgcctgactgcacatggcaa 260
Query: 61 aaatagaaatttgccaagtgacggtgctcagtgaaaaatacagattcaggtcaggtgtcg 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatagaaatttgccaagtgacagtgctcagtgaaaaatacagattcaggtcaggtgtcg 320
Query: 121 gggcatgtatctgtaatcccagctcttgggaggtagaggcaagagcatcaagagttcaag 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggcatgcatctgtaatcccagctcttgggaggtagaggcaagagcatcaagagttcaag 380
Query: 181 gtcagccttggctcactgtgaatttggaagatagtctgtactgagaccctgtctcaaaac 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 gtcagccttggctcactgtgaatttggaagatagtctgtactgagaccttgtctcaaaac 440
Query: 241 aagcaaacaaaacaacaacaaaacaaaacaaaaaaaaaaaccccatagatttaggtggat 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 aagcaaacaaaacaacaacaaaacaaaacaaaa---------ccatagatttaggtggat 491
Query: 301 tgaaatgagaaagacatcattgctaccttggagagctgaaagaattctcttttcaaagct 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 492 tgaaatgagaaagacatcattgctaccttggagagctgaaagaattttcttttcaaagct 551
Query: 361 gagatttgaaagattaaaaatgaaatggaatgaaaagcaaggcccaggttcctcaaaata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gagatttgaaagattaaaaatgaaatggaatgaaaagcaaggcccaggttcctcaaaata 611
Query: 421 ctgagaaatacaagacaaggtaagggtgtccaaaggatcaaggtagaagtataagaactt 480
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 612 ctgagaaatacaagacaaggtaagggtgtccaaaggatcaaagtagaagtgtaagaactt 671
Query: 481 tccagatatctaaaagaaaagttgctatatccaagtgagatgtagtgactcatgatataa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tccagatatctaaaagaaaagttgctatatccaagtgagatgtagtgactcatgatataa 731
Query: 541 ccccaatactcaaaggggt 559
||||| |||||||||||||
Sbjct: 732 ccccagtactcaaaggggt 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
