BAC Information

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BAC

Clone NameMSMg01-116G01
Chromosome9 (Build37)
Map Location 29,111,581 - 29,112,006
singlet/doubletsinglet
Overlap geneHnt
Upstream geneOpcml, LOC625222
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116G01.T7 (MSMg01no116_g01.b1)MSMg01-116G01.TJ (MSMg01no116_g01.g1)
ACCAG327774AG327775
length718712
length of high quality
(start - end)
515 (55 - 569)546 (81 - 626)
definitionCHROMAT_FILE: MSMg01no116_g01.b1 PHD_FILE: MSMg01no116_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:37 2005CHROMAT_FILE: MSMg01no116_g01.g1 PHD_FILE: MSMg01no116_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCCCTCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCTCAGTATCCTAGATTTACCTCAAACTCCTGAATA
CAGTTAACTCCTTTCATCCATGCAATATAGTCAGTCATGTGCCAGTTCCA
TCTCCATTCTTCAGAGGAAGCTTCTTGAGGGCAGAGCTAAGGGCTGTTAA
TGTGTCTGTATACTTTAAAAATGACTGGCACAGCAAATACATGGTGGAGT
ACCTTTACATTGCTGTGGGGGATGAGGTCGCAGAAAGAAAGGAGTGGGAG
AGAAAGGAAGAAAGAAAGGAATTAAAAAACAATAGAAGACAGTGTATAAT
TAAGTGCGTAAATTGTGTGGTTCAGGCTAATTATAAAACCTTTACAAAGA
AATGCAATTTTATTACTTTCAAGAACATAAAGTTAAGTTAATTAATGGCT
AACAATATGGTGTCAAGTAGCTGTCTTGTCATGTCCACTGTAATTAATCA
ACACTTCTTTCATAAATGCAAAAATGGACCTAAGCCCAGCCCATCTCCCG
ATTACTGAAAACTTTTAATAACGATACTCTGAAATAACAAAGTATTCTAT
ATACAAGGTTAGATGGAAATCTAAAGATGAAAGCACATATGTAGAGAGAA
GGCACAGGGTATATCTAAGCATTCTTTTATTTTTAATGAGTACTAACAAG
GGTTTCCACAAAGATTAA
CTTTNCTCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAT
GGCAGAGAAACACCTGAAAAAATGTTCAACATTCCTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACTTCACTCCAGTCAGAATGGCT
AAGATCAAAAACTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAG
GAGAACACTCCTCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTG
GAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTATCGGAGG
ATCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACCGGT
AAGAAGAACACATGCTCTACTATGTTCATAGCAGCCTTGTTTATAATAGC
CAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGA
AAATGTGGTACATTTACACAATGGAATACTATTCAGCTATTAAAAAAATG
AATTTATGAAATTTCTAGGCAAATGGATGGACCTGGAGGGTATTCATCCT
GAGTGAGGTAACCCAATCACAAAGGAACTCACACAATATTTACTCCCTGA
TAAGTGGATATTAGCCCAGAAACTTAGGACACCCAAGATATAACATACCA
TTTGCCAAACGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_g01.b1 MSMg01no116_g01.b1 CHROMAT_FILE:
MSMg01no116_g01.b1 PHD_FILE: MSMg01no116_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:37 2005
         (515 letters)



>mm_chr9_29111093_29112006
          Length = 914

 Score =  779 bits (403), Expect = 0.0
 Identities = 422/429 (98%), Gaps = 3/429 (0%)
 Strand = Plus / Minus

                                                                       
Query: 87  gccagttccatctccattcttcagaggaagcttcttgagggcagagctaagggctgttaa 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 gccagttccatctccattcttcagaggaagcttcttgagggcagagctaagggctgttaa 855

                                                                       
Query: 147 tgtgtctgtatactttaaaaatgactggcacagcaaatacatggtggagtacctttacat 206
           |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 854 tgtgtctgtatactttaaaaatgactggcacagcaaattcatggtgtagtacctttacat 795

                                                                       
Query: 207 tgctgtgggggatgaggtcgcagaaagaaaggagtgggagagaaaggaagaaagaaagga 266
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tgctgtgggggatgaggt--cagaaagaaaggagtgggagagaaaggaagaaagaaagga 737

                                                                       
Query: 267 attaaaaaacaatagaagacagtgtataattaagtgcgtaaattgtgtggttcaggctaa 326
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 736 attaaaaaacaatagaagacagtgtataattaagtgc-taaattgtgtggttcaggctaa 678

                                                                       
Query: 327 ttataaaacctttacaaagaaatgcaattttattactttcaagaacataaagttaagtta 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ttataaaacctttacaaagaaatgcaattttattactttcaagaacataaagttaagtta 618

                                                                       
Query: 387 attaatggctaacaatatggtgtcaagtagctgtcttgtcatgtccactgtaattaatca 446
           ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 617 attaatggctaacaatatgttgtcaagtagctgtcttgtcatttccactgtaattaatca 558

                                                                       
Query: 447 acacttctttcataaatgcaaaaatggacctaagcccagcccatctcccgattactgaaa 506
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 acacttctttcataaatgcaaaaatggacctaagcccagcccatctcccgattactgaaa 498

                    
Query: 507 acttttaat 515
           |||||||||
Sbjct: 497 acttttaat 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 914
Length adjustment: 10
Effective length of query: 505
Effective length of database: 904
Effective search space:   456520
Effective search space used:   456520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)