Query= MSMg01no117_d20.b1 MSMg01no117_d20.b1 CHROMAT_FILE:
MSMg01no117_d20.b1 PHD_FILE: MSMg01no117_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:43 2005
(491 letters)
>mm_chr9_23194399_23195289
Length = 891
Score = 652 bits (337), Expect = 0.0
Identities = 343/345 (99%)
Strand = Plus / Minus
Query: 1 gcttggaaacagccacgagcccctgcaaccaactcctaactcagataatgtagggaacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gcttggaaacagccacgagcccctgcaaccaactcctaactcagataatgtagggaacca 286
Query: 61 aaggtagcaactgtgaattctattcaagtgcagtacttacaagaattactccctgggaag 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 285 aaggtagcaactgtgaattctattcaagtgcaatacttacaagaattactccctgggaag 226
Query: 121 gataaatactaaggtccactatttcactcacagaacatggagaagcccagctggaatttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 gataaatactaaggtccactatttcactcacagaacatggagaagcccagctggaatttt 166
Query: 181 atccccagtgactaactttcacggtgctgtaaagtaccacacatactatcaactgagaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 atccccagtgactaactttcacggtgctgtaaagtaccacacatactatcaactgagaag 106
Query: 241 tataatcatccatctgtgaactgtgtaaactacaatagcaacgagcctgacaaggtatgc 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 105 tataatcatccatctgtgaactctgtaaactacaatagcaacgagcctgacaaggtatgc 46
Query: 301 ccacaggtacaataccagcacagccattgcggaggtaaccaatca 345
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 ccacaggtacaataccagcacagccattgcggaggtaaccaatca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no117_d20.g1 MSMg01no117_d20.g1 CHROMAT_FILE:
MSMg01no117_d20.g1 PHD_FILE: MSMg01no117_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:43 2005
(509 letters)
>mm_chr9_23127128_23128036
Length = 909
Score = 926 bits (479), Expect = 0.0
Identities = 498/505 (98%), Gaps = 2/505 (0%)
Strand = Plus / Plus
Query: 1 actgtatacttagagaacctgttgtattctttcagtgggcagaatgtcctgtttatgtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgtatacttagagaacctgttgtattctttcagtgggcagaatgtcctgtttatgtgc 260
Query: 61 tgttttctttttacaatgtgattgttgctgcatgtcaacctagtggcctttagctcattc 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 tgttttctttttacaatgtgattgttgctgcatgtcaacctagtggcctttggctcattc 320
Query: 121 atgattgtctataacccttcttataagagacttcccaatcaccttggtggtcagctaatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgattgtctataacccttcttataagagacttcccaatcaccttggtggtcagctaatc 380
Query: 181 actggagaggaaattcttgacacgtcttgggcaaatatgtctccctgtctctgctcagag 240
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 actggagaggaaattcttgacacgtcttgggcaaat--gtctccctgtctctgctcagag 438
Query: 241 gctctccgagtactgttggtcatgtcttcaacactcctgtaggaaacattcagtcctaat 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gctctctgagtactgttggtcatgtcttcaacactcctgtaggaaacattcagtcctaat 498
Query: 301 cctcccttagttcctggttatacagtgcctctgaactgtctgcctatgagaggtttcagg 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 499 cctcccttagttcctggttatacagtgcctctgaactgtctgcctgtgagaggtttcagg 558
Query: 361 tttcttgggtgtttcctgggcatggcgtagtctttgggatcttcagcaatacatagaact 420
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tttcttgggtgtttcctgggcgtggcgtagtctttgggatcttcagcaatacatagaact 618
Query: 421 tttcaaatttgtctgtagccaatcttttcttttcaactaagtgtttcagtctgtaattgc 480
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tttcaaatttgtctgtagtcaatcttttcttttcaactaagtgtttcagtctgtaattgc 678
Query: 481 aatgctgctttaactgtcccttctg 505
|||||||||||||||||||||||||
Sbjct: 679 aatgctgctttaactgtcccttctg 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
