BAC Information

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BAC

Clone NameMSMg01-120A23
Chromosome9 (Build37)
Map Location 78,718,388 - 78,718,911
singlet/doubletsinglet
Overlap genenone
Upstream geneElovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957, EG666456
Downstream geneLOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a, Filip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120A23.T7 (MSMg01no120_a23.b1)MSMg01-120A23.TJ (MSMg01no120_a23.g1)
ACCAG330522AG330523
length713719
length of high quality
(start - end)
532 (72 - 603)153 (120 - 272)
definitionCHROMAT_FILE: MSMg01no120_a23.b1 PHD_FILE: MSMg01no120_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:23 2005CHROMAT_FILE: MSMg01no120_a23.g1 PHD_FILE: MSMg01no120_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCCAGAATCCGCGGAATT
CCAGGCTTATTCCATTGGATCACTGTAGCTATTTCCAAAGGATGATATAG
TCCAATTAGTATGAAGAAATCCCATTAACAAGACATTCCAAATTTCCTTC
AAAGTTAAAAACTTATTTTGGGGGAAAAATAGCTGGCATTTTTTCTTAAT
GTTGATGGACACAAGTTTCAGCTTTTTAGTATCGAACCATCAAGTAGAAC
CCAGAGTACTTGCTGTTGCTGTTCCTTTGTAGCCAAATGCTGGACATAAT
ATATGTCAGAGATGCTCTGCATTTGGCATGGCAACTCCTTGGAGCGATTT
CTTACCTCTTTCATTGTGGCAGACACAACAAATAGCAAATGACCTCTTCT
CTAAAGTCTTTCCCCTCTATCTCCTGTCTCAGAGACCACCGAGAGACTTA
TGACTTTGGGGTAGTTTCATGCATAATGGCAGGGGATGAAAGAGACCCTG
GTCAAAGTCAAAGTTCTTTACTTTGCGGCAGCACAAGCAGCATAGCCATG
AGCGTATTTGCATCTGATCCTTCTTTCCTAAAGGCAGCACATCTGACTGA
TGCCATTGCATATGGAGTGAATTGCATTAAAGTGGAGTTTAGGGATCTGG
AATCCTTTGGGACAGACTAGAAACATACTGTCCTTTGTCAGGAAATGGAA
TGCCTATCTATCG
TAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXGGAGGGGAGAAGGGAGTGGGTGTGTGGGTC
AGTGAGCACCCTCATCCCCCAGGGGGAGGGAAGATGGGAGAGGGGGTTTC
TGGAAGGGAAACCAGGAAAAGGGATAACATTTGAAGTGTAAATAAATAAA
ATATCCAATAAAAAATTAGGTTTAAAAAAGAAGTTGTTTTGAGTTTCAAG
GAAATAAGCAAGACTGTGTTCTAATTGCATTTTTAAAGCTCTGTACTAAA
AATAGATGACATAGGATTTTTTATCAGATATTCTGCAGTCTGCAGATTAT
GTTTCCCTTGATGGAATTAAACCGCCCAGAAAACAAAAAGAAATGGTTTA
CATCCGTGACTAAGCTTGGGAAATATCAATCTAGTTATGATTTACAACAG
AAGACATTAACCAGGCAATTTTAGTGACTTATCTAATAACATACCACCCA
TCTGCTATGCCTTGGCTATCCACTAATGGAAAATAAATCACATTGGTACA
TAGTAGTTTTAAACCATATTTATATCTGGTTCTGTGAGTCCGGGATCGCA
ACTCCCGCTTGGAACAACATCTCTGTTCCAGATCTTTCATGAAAAGTTGC
CATAGCCGTTCCATTAGACGTGATAAAGTAATTGAAAGTCTTGTCCGAAA
GACAAGGGCCCCATAACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_a23.b1 MSMg01no120_a23.b1 CHROMAT_FILE:
MSMg01no120_a23.b1 PHD_FILE: MSMg01no120_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:23 2005
         (532 letters)



>mm_chr9_78718188_78719111
          Length = 924

 Score =  859 bits (444), Expect = 0.0
 Identities = 507/532 (95%), Gaps = 8/532 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgtagctatttccaaaggatgatatagtccaattagtatgaagaaatcccattaacaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||
Sbjct: 201 actgtagctatttccaaaggatgatatagtccaattagtatgaagaaatatgattaacaa 260

                                                                       
Query: 61  gacattccaaatttccttcaaagttaaaaacttattttgggggaaaaatagctggcattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 261 gacattccaaatttccttcaaagttaaaaacttattttgggggaaaa-tatctggcattt 319

                                                                       
Query: 121 tttcttaatgttgatggacacaagtttcagctttttagtatcgaaccatcaagtagaacc 180
           |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 320 tttcttaatgttgatggacacaagcttcggctttttagtatcgaaccatcaagtagaacc 379

                                                                       
Query: 181 cagagtacttgctgttgctgttcctttgtagccaaatgctggacataatatatgtcagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cagagtacttgctgttgctgttcctttgtagccaaatgctggacataatatatgtcagag 439

                                                                       
Query: 241 atgctctgcatttggcatggcaactccttggagcgatttcttacctctttcattgtggca 300
           |||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||
Sbjct: 440 atgctctgcatttggcatggcaactccttggaacaatttcttacctcttccattgtggca 499

                                                                       
Query: 301 gacacaacaaatagcaaatgacctcttctctaaagtctttcccctctatctcctgtctca 360
           ||||||||||||       ||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 500 gacacaacaaat-------gacctcttctctaaagtctttcccctctacctcttgtctca 552

                                                                       
Query: 361 gagaccaccgagagacttatgactttggggtagtttcatgcataatggcaggggatgaaa 420
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gagaccactgagagacttatgactttggggtagtttcatgcataatggcaggggatgaaa 612

                                                                       
Query: 421 gagaccctggtcaaagtcaaagttctttactttgcggcagcacaagcagcatagccatga 480
           |||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 613 gagaccttggtcaaagtcaaaggtctttactttgcggcagcgcaagcagcatagccatga 672

                                                               
Query: 481 gcgtatttgcatctgatccttctttcctaaaggcagcacatctgactgatgc 532
           |||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 673 gcgtatttgcatctaatccttctttcctaaaggcagcacatccgactgatgc 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 924
Length adjustment: 10
Effective length of query: 522
Effective length of database: 914
Effective search space:   477108
Effective search space used:   477108
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)