BAC Information

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BAC

Clone NameMSMg01-121D05
Chromosome9 (Build37)
Map Location 29,913,156 - 29,913,437
singlet/doubletsinglet
Overlap genenone
Upstream geneHnt
Downstream geneSnx19, LOC666478, Adamts15, Adamts8, Zbtb44, BC038156, St14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121D05.T7 (MSMg01no121_d05.b1)MSMg01-121D05.TJ (MSMg01no121_d05.g1)
ACCAG331374AG331375
length714712
length of high quality
(start - end)
88 (207 - 294)282 (68 - 349)
definitionCHROMAT_FILE: MSMg01no121_d05.b1 PHD_FILE: MSMg01no121_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:54 2005CHROMAT_FILE: MSMg01no121_d05.g1 PHD_FILE: MSMg01no121_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGCCGCAAACGACTACTATATTCCAAGATCCGCGGAATTCTTTGGGT
TTCCGACGCCTGCGTGGGTTACCCAGTGACTAAGCTTGGTTCCAATCTGC
ACCGTCGTTCTGTAACCCATGCGCCTCGCAGATCTGCTGACTCCATCAGA
AAACAAACAAGCTCTTGCTCCTGTTCGTGGCCGGCAGAAACTGACCTGGT
ATAGAAATCAGAGTCAACATCTCAGCAATCTAACAAATGAAGCCCCATGA
CTGCTGTTTATTTGCTGGGGATGTGTTTCCCTCGACCCCAGGAAGGAGAG
AGTACGACGGGATTGTTGAATGATTGCTTGGGAAGGAAAGCAAAGCTTGG
TATATTAAGTTCACCCCCATCCTTGCCTTTGAAGGAGTCTCATCTGTGAC
TAACTGGTGCTTAACACCTTCCAAGCCCATCTTCGTCACATTCCCTTCCT
GACCTTCCCTCAAAGGCTTCCTGAACTCTTCTTGTCCGAACTCTTACAGA
TGGGTCAATTAAGACTTATTATAACTCTTTATTCCCTCTGCCTGGAATGC
CCCCCCTGGGTAATCCTTTCACTGCACCCTGAGGAAGCTCTAACCGCACC
TAAACGGATCGTCTTAATTGACAGAACATCGTCTGAACCCCCGCCCCTGT
ATGTAAAAGTTTCATTGACCCCGCCCCCTCACCTGCGAAGTTCCTAACTT
CCCTCCCTCTCGTC
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCAGTGCAGGGTGTGATGGACTCAAAATGTCGGCTCTT
TTATGTGCTAGCCCCCTGAATCAGTTCGTTGTCACTCTCTCTTCTTGACT
GGGTCCAGAAGGATGTGAAATTGGCTGGAATTGCAATTGAGATTTGAGGC
AGACATGTCAGAGGACTTCCTGACCTGCAGGGCACCAATGTGAGAGAATG
AAGTTATGTCTGTCATACTCGTTCTTTGTCTCTGTGCCTCTCCCTTGCTC
TTTGGAGCATTTTCCGTCTTCCTTCTCTCTTTTGCTCATTGAGTTTAGCT
GTTGTTGATCGGCGCCCCCCCATCATGAACTTGCTCATGACTAGGAGGAA
GGGAAATGGAATGCTGACCTCCTGTGGCTCCCAGCGAGCAGGGATGACAA
CCTTATGTTAAATTTATGTGTTCTCATTTTTGTGGAGTATGACTATATTT
CTGTACATTTTTATTTCACCCTTTAAACATTTATGTTCCGGTGTTATGAT
TAATTACCCGCAGGAAACCGAATTGTTTGCAAGTATTTTTTTTAAACAAG
ACGGGTAAAAAATCTCATTTCTCTGGAACCCTTTGAATTCAATTTCTTTA
TCGTCCTTGGCAGGGCCCAATTCTCCACCGCTCCGGACTCCTGGACTGCC
CCGCCTTCTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_d05.g1 MSMg01no121_d05.g1 CHROMAT_FILE:
MSMg01no121_d05.g1 PHD_FILE: MSMg01no121_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:54 2005
         (282 letters)



>mm_chr9_29912956_29913637
          Length = 682

 Score =  507 bits (262), Expect = e-148
 Identities = 277/282 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcagggtgtgatggactcaaaatgtcggctcttttatgtgctagccccctgaatcagttc 60
           |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct: 482 gcagggtgtgatggactcaaaatgtcggctcttttatgtgctagcattctgaatcagttc 423

                                                                       
Query: 61  gttgtcactctctcttcttgactgggtccagaaggatgtgaaattggctggaattgcaat 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gttgtcactctctcttcttggctgggtccagaaggatgtgaaattggctggaattgcaat 363

                                                                       
Query: 121 tgagatttgaggcagacatgtcagaggacttcctgacctgcagggcaccaatgtgagaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tgagatttgaggcagacatgtcagaggacttcctgacctgcagggcaccaatgtgagaga 303

                                                                       
Query: 181 atgaagttatgtctgtcatactcgttctttgtctctgtgcctctcccttgctctttggag 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 302 atgaagttatgtctgtcatactcgctctttgtctctgtgcctctcccttgctctttggag 243

                                                     
Query: 241 cattttccgtcttccttctctcttttgctcattgagtttagc 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cattttccgtcttccttctctcttttgctcattgagtttagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)