BAC Information

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BAC

Clone NameMSMg01-121F03
Chromosome9 (Build37)
Map Location 10,066,473 - 10,066,706
singlet/doubletsinglet
Overlap geneCntn5
Upstream gene9030420J04Rik
Downstream geneLOC665154, LOC100039970, LOC665178
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121F03.T7 (MSMg01no121_f03.b1)MSMg01-121F03.TJ (MSMg01no121_f03.g1)
ACCAG331463AG331464
length704704
length of high quality
(start - end)
234 (68 - 301)469 (66 - 534)
definitionCHROMAT_FILE: MSMg01no121_f03.b1 PHD_FILE: MSMg01no121_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:03 2005CHROMAT_FILE: MSMg01no121_f03.g1 PHD_FILE: MSMg01no121_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGCGCGCGCTAAACGACTAATCATTTCAGAGGATCCGCCGAATTCCAAG
CTCTTGCTTTCCTGCCACTACACTGATTATATGACAGCAGCTATTTTTAT
TTTCTCTGCAGAATGTTTCACACCATCGATGCCACTTGTACCCCAGGAGC
CCCATGACTAGATGTAAAGGTCACTGGTTTCTCTTTTAAAAACACAACCC
AAATTTCTTGCTTTGCTAAGATATTTTGAAATTATTTATGGTGAACTCTA
AATGATGACAGGTCTAGGTCCAGCATTTACTCCACGGTGTGCAAGAGCTA
GTAGCATAGGTTCAGTTTAGGCTTTAAACTTCACATTAAAAAGCATCTGC
TTGATATTTCCCACAATGCACTGGTAAACCTTATACAGTCAAAGCTTTTA
TCATTGTTATCAATTATCGTTTGCAATATGGTCAGGAATTATTACTGAAT
ATCCTTATAAAACTGTAAAGATTTTAGATTGAGAATACATATGTATGGAG
AACTATGAGAGCTGTGAGGTCCATCCATGGGGCCCCACCAAAATGATGCA
GAACTTCATCCTGCTCTAGATTAGAAAACTGCGTGCCATAACGGTAGCAA
CTTCCCCGAATATTTATGATCCCCAATCCGGATCCCGGACTTATAAACAC
ACAAAAGGCTCCTTCGACCGCGAATTAATGACCGCATGCTCCCCAGGGGA
GGCG
GTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCACCTGAGGAAACCAAATGGCTGAGAAGCACCTG
AAAAAATGTTCAACATCCTTAATCATCAGGGATATGCAAATCAAAACAAC
CCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATAAAAAATTCAG
GTGACAGCAGATGCTGTCGAGGATGTGGAGAAAGAGGAACACTCCTCCAT
TGCTTGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTG
GTTCCTCAGAAAATTGGACATAGTACTTCCGGAGGATCCCGCAATACCTC
TCCTGGGCACATATCCAGAAGATGTTCCAACCGGTAAGAAGGACACATGC
TCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGA
ATCCAGATGCCCCTCAACAGAGGAATGGATAAAAAAAAATGTGGTACATT
TATACAATGGAGTACTACTCAGGTATTAAAATGAATGAATTTATGAAATT
CCTAGGCAAATGCATGGTCCTGGAGAGCATCATCCTGAGTGATGTAACCC
AATTCACAAAGAAACTCACACAATATGTACTCACTGATAAGTGGAAGCTA
GCCCAGAAACTCTAGATACCCCCGATCTACGATACCTTTTGGCTTAAGAT
TTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_f03.b1 MSMg01no121_f03.b1 CHROMAT_FILE:
MSMg01no121_f03.b1 PHD_FILE: MSMg01no121_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:03 2005
         (234 letters)



>mm_chr9_10066273_10066906
          Length = 634

 Score =  422 bits (218), Expect = e-122
 Identities = 230/234 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctacactgattatatgacagcagctatttttattttctctgcagaatgtttcacaccatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctacactgattatatgacagcagctatttttattttctctgcagaatgtttcacaccatc 260

                                                                       
Query: 61  gatgccacttgtaccccaggagccccatgactagatgtaaaggtcactggtttctctttt 120
           |||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 gatgccacttgtattccaggagccccatgtctagatgtaaaggtcactggtttctctttt 320

                                                                       
Query: 121 aaaaacacaacccaaatttcttgctttgctaagatattttgaaattatttatggtgaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaacacaacccaaatttcttgctttgctaagatattttgaaattatttatggtgaact 380

                                                                 
Query: 181 ctaaatgatgacaggtctaggtccagcatttactccacggtgtgcaagagctag 234
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 ctaaatgatgacaggtctaggtccagcatttactccaaggtgtgcaagagctag 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)