BAC Information

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BAC

Clone NameMSMg01-122F12
Chromosome9 (Build37)
Map Location 93,132,944 - 93,133,530
singlet/doubletsinglet
Overlap genenone
Upstream genePlscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009, LOC100040114
Downstream geneLOC674371, LOC384967
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122F12.T7 (MSMg01no122_f12.b1)MSMg01-122F12.TJ (MSMg01no122_f12.g1)
ACCAG332230AG332231
length1,2511,256
length of high quality
(start - end)		593 (53 - 645)691 (71 - 761)
definitionCHROMAT_FILE: MSMg01no122_f12.b1 PHD_FILE: MSMg01no122_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:41 2005CHROMAT_FILE: MSMg01no122_f12.g1 PHD_FILE: MSMg01no122_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGTTATTNNNNNNNGTAATTGGGCGCTATAXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTGATACTGTTTATAACATTGACATGACGACCTTTGTC
AAATGCCTTTTCTGCATCTACTGTAGTTATATTGTGATTTCTATCTTTAC
ATTTTTTAAATGGTGCAGTACATTTGCTGATTGGTTTATGTTGAACCAAC
CTTTTCACCTGACATGAAAGTAACTTGTTCTTGATCTCATGATCTTCTTA
ACATATTTTCTATTTTGATTGGTGTGAATTTAGTTGAGGATATTTGCATC
TATGTTCACAAAAGAAATAGGTCTGTATTTATTCTGGGTTTTGTTGTGTG
TTCATCCTGTTTGGTATCAGGGATAATTTTTGTTTGAAGAATGAGTTTGG
GCAGTTTTATTAATTTTTTTCTACATTTCAGTACAATTTGAAGGGAGTTG
AAGTTAGACTTCCCTTGAAAATCTGGTAGAATTCAAGAGTAAATATGTAT
GAAGTTTAAATGTATGTAGTGAAATGGGAATAAATGTGTAGCAAAGCCAA
GAGACTAGAAAGAGGGCTAAGACAGAATAAAGGAGGCTTTAATGGAGGAG
GTACAGAGTTGGCAGCAGAACTCATGTGAAATGAAAGGAGCATGGTGTGT
GTGGGTAACAGAAAAAGGAGAGATACCTCAAGGAAAAGGAGGACTGGGAG
AAGGAGGTAAGAGTGTGGATGTCCTCTTTACTGAATGTACGTGTTTTCTT
GTCACTATGTCTCTTCAATTTTATATTTTAATTGTATTATCTATTATGAT
TTTCTTACTCTTTTTATTTATTTATGTACTTTCTTTCTTATTCTTGCTAT
CTTGGTTCCCTACATTATACCTTTTACCCTTTATCTTTCATTCTATATTT
TCTTACTCTCTCTGTTTTTCCTTGCCTACTTTACTCTTCTTTATCTATCT
TTGCTACTGTCCTTATTACTTTTTTTTTTTTCTCCAATTACTTCTTATTT
TTTCCTTCCTTTTCCTCTTTTTTTTTATCTTCTTCCTTTTTTTATTTTAT
TCTTTTTCTATTCTTTTATTTTTATCTTCATTATCATCTCTTCATCCTTA
GTCTTTTCTTTCTTTCTTCCCTGCTTTTTTCCTGTTCCCTTTTTCCTCTA
ATTTTGTATATTGATTTTGTCCCTTTTCTTTTCCTCTTATACTCTTTACT
CTCTCGTCCTCATGCTTTTCTATCTGTTCNTCTCAGTCTCTTCTTCTCTT
C

TTTTTNTATGATGTGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTTTGCCACTACATTTACTGTGAGAATAT
GATTGCAGTACTTATTCTGTGTCATAAAGAGAGCATTTTCCAAACCTCTT
CCCTATCTTACAGCTCTTAGCATCCTTTCTGTCTTGTCTTCTGTGATATT
CTCTGAGAATCAGAGGATATATACATGTCCTGTTTAAGGCTGAGCACACA
TTTCTTCTTTATTTTCCACATCTTCTGCCAGCATGGGATTCTGTATTCAT
TGTCATTTGCCATAAAGATAGGCTTATCTGATCAAGACCAAGAATTGCGT
TACTCTATGAGTATAAACATTGATATTTTAGAAGGTAGTTTGATGTTATG
TTTGCTTAGGTGAACAATAGTAATATGTTTCCCCACTATGACCTATGATT
TCCTTGGCCAGTGTTTTCATGGGATTAACAGACTTCCTTTGTACACAGAT
ATGCAGTCTATTTTAAAGAGACTTACATGTATTGCTGAAAAGAACCTGTG
TTTGATAGTGTTTTGATGAAAACTGCTATTCTTTAGAAATCTAGTGGGTC
CATTTTATCAATGATGATATTTAACTCCCATGTTTCTGTTTCTGTTTTGT
CTGGATGAATTTTCTATTGGCAAAAGTTGAATTTTGACGCAGTCTACTTT
GATTTTGTTGTTCAGTTTGTTCCCAAATGCCAACATTCTTAATTTGGGGA
TGATTATGCTTGCAATTCTAATGTCCTTTTGGTAAAATATTTCTCTGTTT
AAAAGAATGAAGGATGTTTTTCTGTGTTGCTTTCAGACTCATTTTGGATT
AAAGCATATATTTTTAAAATTTATTAATTGTATGAGTGTTCCTTCCTGAT
AGTTTTTATTTACCCCTTACATGTGTTGTTTATCCTCCTATTCCTATTAA
AACTATGTCTGACCCCTTTATCTGATTTCCCCAATCGTCTTTTCAAATTG
TCTTATTTTCTTCTGATCCTTTTTACCTGGCTTCTTCTTTTATACATATT
TCCACGTTCTCTCTACACTCTTTTCTCCTACTCCTTTCATTCCCTCCTTT
AGAACTAATTCTCTTCCATTCCATTTATTTATTCTGAATTCCTCTCTTTC
TTCGTTACTTGCTGTTTCTCATGCCTTTTCTACTCTTTCTTTTGTTCATC
TTTTATCTTACTCTTCTTTTTTCTTTTTCTATTTGATCTCCGTCTCTTTC
GCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_f12.b1 MSMg01no122_f12.b1 CHROMAT_FILE:
MSMg01no122_f12.b1 PHD_FILE: MSMg01no122_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:41 2005
         (593 letters)



>mm_chr9_93132738_93133730
          Length = 993

 Score = 1077 bits (557), Expect = 0.0
 Identities = 581/589 (98%), Gaps = 2/589 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgatactgtttataacattgacatgacgacctttgtcaaatgccttttctgca 64
           ||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcttgatactgtttataacaagggcatgacgacctttgtcaaatgccttttctgca 266

                                                                       
Query: 65  tctactgtagttatattgtgatttctatctttacattttttaaatggtgcagtacatttg 124
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tctacagtagttatattgtgatttctatctttacattttttaaatggtgcagtacatttg 326

                                                                       
Query: 125 ctgattggtttatgttgaaccaaccttttcacctgacatgaaagtaacttgttcttgatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctgattggtttatgttgaaccaaccttttcacctgacatgaaagtaacttgttcttgatc 386

                                                                       
Query: 185 tcatgatcttcttaacatattttctattttgattggtgtgaatttagttgaggatatttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tcatgatcttcttaacatattttctattttgattggtgtgaatttagttgaggatatttg 446

                                                                       
Query: 245 catctatgttcacaaaagaaataggtctgtatttattctgggttttgttgtgtgttcatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 catctatgttcacaaaagaaataggtctgtatttattctgggttttgttgtgtgttcatc 506

                                                                       
Query: 305 ctgtttggtatcagggataatttttgtttgaagaatgagtttgggcagttttattaattt 364
           ||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||
Sbjct: 507 ctgtttggtatcagggataatgttt-tttgaagaatgagtttgg-cagttttattaattt 564

                                                                       
Query: 365 ttttctacatttcagtacaatttgaagggagttgaagttagacttcccttgaaaatctgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttttctacatttcagtacaatttgaagggagttgaagttagacttcccttgaaaatctgg 624

                                                                       
Query: 425 tagaattcaagagtaaatatgtatgaagtttaaatgtatgtagtgaaatgggaataaatg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tagaattcaagagtaaatatgtatgaagtttaaatgtatgtagtgaaatgggaataaatg 684

                                                                       
Query: 485 tgtagcaaagccaagagactagaaagagggctaagacagaataaaggaggctttaatgga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgtagcaaagccaagagactagaaagagggctaagacagaataaaggaggctttaatgga 744

                                                            
Query: 545 ggaggtacagagttggcagcagaactcatgtgaaatgaaaggagcatgg 593
           |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggaggtacagagatggcagcagaactcatgtgaaatgaaaggagcatgg 793


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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