BAC Information

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BAC

Clone NameMSMg01-123J08
Chromosome9 (Build37)
Map Location 84,713,955 - 84,714,506
singlet/doubletsinglet
Overlap genenone
Upstream geneTtk, EG546150, Bckdhb, EG666669
Downstream geneLOC666672, BC023892, Ibtk, 4933431K14Rik, EG434426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123J08.T7 (MSMg01no123_j08.b1)MSMg01-123J08.TJ (MSMg01no123_j08.g1)
ACCAG333151AG333152
length1,2661,256
length of high quality
(start - end)
335 (130 - 464)548 (132 - 679)
definitionCHROMAT_FILE: MSMg01no123_j08.b1 PHD_FILE: MSMg01no123_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:30 2005CHROMAT_FILE: MSMg01no123_j08.g1 PHD_FILE: MSMg01no123_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGAGATCTNNNNNAGGCACTGGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCTGTACATTTTTGGCTAATATCTACTTATTAGTGAGTAC
ATACCATGCATACCATTTAGGCTTTGAGTTACCTCACTCAGGATGATGTT
TTCTAGTTCCATCTCTTTGCCCACAAAACTCATGATGTCCTTGTTCTTAA
TAGCTGAGTAGTATACCATTGTATAAATGACCCACATTTTTGGTATCCAT
TCTTCTGTTGTGAGACATTGTTGTTGTTTCTAACTGATGGCTATCACAAA
TAAGGCCAATTTGAACATAGTAGAACATGTGCCCATGTAGCTTGGTGGGG
CATCTTTTGGGCATATGCCCAAGAGTGGTGTAGCAGGGTCTTCAGGTGTA
TCTATTTCCAATTTTCTGAGGAACCTCCACGCTGATTTTCAAAGTGGTTT
CACCAGTTTGCAATTTTATCAACCAAGCAGGAGTGTTCCTCTTTCTCCAT
GAAAAAGACAACATGTGCTGTCACCTGAATTTTTTATCCTAGCCATTCTG
ATTGGTGTAAAGAGAAATCTCAGGGTCATTTTGATATGAATTTCTCTGAT
CACTAAGGACTTTGAACATTTAAGTGCTTCTCAGCCATTCAAGATTCCTC
TGTTGTGATTTTTCAGTTTAATTTTATACCCCAATTTTGACTGGATTGCT
TGGTTTCTTGGTGGTTAGCTTCTTGAGTTCTTTATATATTCTGGATATTA
GCCCTCTAGTGGATGTAGGCTTAGTGAAGATTTTTTTCCCAATATGTAGG
TTGCCAAATTGTCCTATTTGGCATGTCCCTTGCCTTACAGAAACTTTTCC
AGTTTTTATGAGGTCCCCATTTATCCATTCTTTGACCTTACACCCTGAAC
CCTTGTACTTCCGTTTTACAAAATTTCCCCGTGTCCCTGACCTCCAAGGT
CTTTTTTTCCATTTTTCCCTTCCCTAAACTCCACCGTCCCTTGTTTTACT
TTTGAACTCCCTGGTTCCCCCTTGGAATTTGAACCTTTGTCCCAGGTGGA
CCCCTTATTCCCACCACTTTCCCTTTTTCCACCCCACCGCCTCTCTTATA
CCCTAAATCCTTTTTTCTTCTATAATTTTTTTTCCCCTCGCAAATCTTTC
TGGATCCTCCCTTATCCCACAACACCACTATCCTCCTCGTTAACCTTCGT
CATTTCTTATTTCTTTGCAAACCTTCCACTGCTCTCTCCCTCCTCTTCAC
CACCTCTCTCCTCTTC
NAAATTTATTNNNAAATCATGGCATGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGGAACAGCAGTCGGTGC
TCTTAAATCCTGAGCCATCTTTCAAGTCCTACCTAGAAAAATTATAAAGA
AATCAAAGCTTTAAAGAAATGGTGTTACAATAAACAGACTTTTGTAGAGC
ACAGTGTGTACATATATGTGCATACATATTACAAATATGAAAATATGATG
AAGGAAATTAAAGGACACCAAAGTAGATGGGGAGATGCATATACTTTATA
AGTTAAGGTTTCTTTTTCCATGCTAAGCCTTTCTAATTTTTCTGAAGACT
TACTTCAAATACAACTAAAATTTGGGCAGATTTTTCTTCTATCAACATGG
ACACATTAATTCGAAATGCACAAAAATATAAAGGATGTGAAATAGTCCCC
CCAAAATGTTAAAAAAGATACCAGTTAGGGTACTTTATGCTGCCTTCTTT
CAATACTCATCATCAAGACACACAGATCCTTCTCTCAGCTTTTCTGGAGC
TTGAAAGGCAGCGTTGCTTAGTGAGGAGCAAGTGTTTGATAAGGATCAAG
ACTGTATCTTGGGAAACCATGTCCTTTTTCTCCCTAGAGGTCAGGTGCTG
ACACAGCTGATTAACTCCTTTTGGTTGGCCTTCTTGGAGACTTGTCTCAT
ATAAGCTCAGAAATGAACCATACATTTTGTGTATGTAAAAATCTGTGGGT
TTTATCTCCTCCGCCTCATTCTCATTGATTTTTTTTTCTCGGCTCCCTTT
TGAGAAAGTCTGCTGGGAAGCTTTGCGGTCTGATCTCTCAACCCTAATCA
AATGAGAATGCTTATTCTTGCTCAAACTTGTCCTGGGCAAAGATGCTGAT
GACTGCCTTCCGATCAAAGAGCTGGTTCCATGTGAGTCCTAAACCCCCAA
CCCTATCTCCTTAANCCCACGAACGCTTCCCAAGCTTTGGGTGCATTATT
TAACTTTAAAACATCCTTGAATACCCGTTTTCCCTGCCTTGATTAAAAAT
ATCCTGTTGACCAGTCCCCCTTTTTTCCCCAACCCCCCCAATTATTTTAC
CCCTTCCCCCAATAAAATGTTCTCGGCCCTAAAATAACCCCCAGCCTACC
CAATCTAAAATTCTAACCCCCTTATCTCTCTGGTCATCTCAAACAATGCT
CATCTTTGTGCCCCTAACTTTCAAATTCTTTCCCCCCGGTCACTTTCCAC
AAAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_j08.g1 MSMg01no123_j08.g1 CHROMAT_FILE:
MSMg01no123_j08.g1 PHD_FILE: MSMg01no123_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:30 2005
         (548 letters)



>mm_chr9_84713755_84714706
          Length = 952

 Score =  977 bits (505), Expect = 0.0
 Identities = 539/553 (97%), Gaps = 6/553 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctagaaaaattataaagaaatcaaagctttaaagaaatggtgttacaataaacagactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 cctagaaaaattataaagaaatcaaagctttaaagaaatggtgttacaataaacagactt 693

                                                                       
Query: 61  ttgtagagcacagtgtgtacatatatgtgcatacatattacaaatatgaaaatatgatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ttgtagagcacagtgtgtacatatatgtgcatacatattacaaatatgaaaatatgatga 633

                                                                       
Query: 121 aggaaattaaaggacaccaaagtagatggggagatgcatatactttataagttaaggttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 aggaaattaaaggacaccaaagtagatggggagatgcatatactttataagttaaggttt 573

                                                                       
Query: 181 ctttttccatgctaagcctttctaatttttctgaagacttacttcaaatacaactaaaat 240
           |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 572 ctttttccatgctaagtctttctaatttttctgaagacttacttcaaatacacctaaaat 513

                                                                       
Query: 241 ttgggcagatttttcttctatcaacatggacacattaattcgaaatgcacaaaaatataa 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ttgggcaaatttttcttctatcaacatggacacattaattcgaaatgcacaaaaatataa 453

                                                                       
Query: 301 aggatgtgaaatagtccccccaaaatgttaaaaaagataccagttagggtactttatgct 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 452 aggatgtgaaatagtccccccaaaatgttaaaaaagaaaccagttagggtactttatgct 393

                                                                       
Query: 361 gccttctttcaatactcatcatcaagacacacagatccttctctcagcttttctggagct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gccttctttcaatactcatcatcaagacacacagatccttctctcagcttttctggagct 333

                                                                       
Query: 421 tgaaaggcagcgttgcttagtgaggagcaagtgtttgataaggatcaagactgtatctt- 479
           |||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||| 
Sbjct: 332 tgaaaggcagcgttgc-tagtgaggaggaagtgtttgataaggaccaagactgtatcttg 274

                                                                       
Query: 480 ----gggaaaccatgtcctttttctccctagaggtcaggtgctgacacagctgattaact 535
               |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 273 ggaagggaaagcatgtcctttttctccctagaggtcgggtgctgacacagctgattaact 214

                        
Query: 536 ccttttggttggc 548
           |||||||||||||
Sbjct: 213 ccttttggttggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 952
Length adjustment: 10
Effective length of query: 538
Effective length of database: 942
Effective search space:   506796
Effective search space used:   506796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)