Query= MSMg01no128_k08.b1 MSMg01no128_k08.b1 CHROMAT_FILE:
MSMg01no128_k08.b1 PHD_FILE: MSMg01no128_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:49 2005
(471 letters)
>mm_chr9_113005100_113005970
Length = 871
Score = 772 bits (399), Expect = 0.0
Identities = 453/471 (96%)
Strand = Plus / Minus
Query: 1 gtcacaatggcttttccaccacggtagactgtatccccttgaaccacaagcctcatgagc 60
||||||||| |||| |||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 791 gtcacaatgcctttcccaccacggtagactgtatccccttgaaccacaagcgtcacgagc 732
Query: 61 cacccttccttaagttgcctttgttgggcattcactcacatcaataggaaaagtaaccaa 120
|||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 731 caccctcccttaagttgcctttgtcgggcattcactcacatcaataggaaaagcaaccaa 672
Query: 121 cccagtactgcagggcgagcatgtgagaaagcccctttgtccttagattgagatttaaac 180
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 671 cccagtactgcagggcgagcatgtgagaaatcccctttgtccctagattgagatttaaac 612
Query: 181 cctgggttcttggatttgatgatttcagacaattccacagtgctccatggttttggtagt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 611 cctgggttcttggatttgatgatttcagacaattccacagtgctccatggttttggcagt 552
Query: 241 ctataactcatggttgcccattaacttgtctgtttttctggaggaaaaggccataaggat 300
|||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ctataagtcatgcttgcccgttaacttgtctgtttttctggaggaaaaggccataaggat 492
Query: 301 catgatttagaaggagggatggtgaagatgaacagtgggaagtgccaaacagctgatgca 360
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 491 catgatttagaaggagggattgtgaagatgaacagtgggaagtgccaaacagctaatgca 432
Query: 361 tcaggatgactgagatgccagagactcgtggccatgtgtgggaacaccctgagcatcgtt 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tctggatgactgagatgccagagactcgtggccatgtgtgggaacaccctgagcatcgtt 372
Query: 421 ttcctggcttccaggaaggaagattgtcctattcttcatgccttcctcagc 471
|||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 371 ttcctggcttccaggaaggaagattgtcctattcttcacaccttcctcagc 321
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no128_k08.g1 MSMg01no128_k08.g1 CHROMAT_FILE:
MSMg01no128_k08.g1 PHD_FILE: MSMg01no128_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:49 2005
(423 letters)
>mm_chr9_112840821_112841642
Length = 822
Score = 772 bits (399), Expect = 0.0
Identities = 417/423 (98%), Gaps = 1/423 (0%)
Strand = Plus / Plus
Query: 1 ctttacatttacagagagatattagaggatcaaagaataagccagatgtgttgactcaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttacatttacagagagatattagaggatcaaagaataagccagatgtgttgactcaag 260
Query: 61 aggaaacgttcaccccagactctaagtgtcctcatcattagtagcaatgagaagagagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaaacgttcaccccagactctaagtgtcctcatcattagtagcaatgagaagagagga 320
Query: 121 tgaaagccatgtcagctgcagtgctccacatcacccaggaccatcagccagtcagctgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaagccatgtcagctgcagtgctccacatcacccaggaccatcagccagtcagctgtc 380
Query: 181 agcagggtgggagtctgtgtcatcctttgggaaaaagaaaaatcctaaacacctctctct 240
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 381 agcagggtgggagtctgtgtcatcctttgg-aaaaagacaaatcctaaacacctctctct 439
Query: 241 gcccaaaatatattagtttcattagagtctaaaatactctatttcagccttgcttatgct 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 440 gcccaaaatatattagtttcattagagtctaaaataatctatttcagccttgcttatgct 499
Query: 301 aacagtgtttaaatcactactaaatcctttcttttctctttctttcccctagctgataac 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 500 aacagtgtttaaatcactactaaatcctttcttttctctttctttcccctagctgaaaac 559
Query: 361 catgttgacaccacccagctcttaggaatgacttttctccccttctactgctgcctgtta 420
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 560 catgttgacaccacccagctcttaggaatgacttttcttcccttctgctgctgcctgtta 619
Query: 421 gaa 423
|||
Sbjct: 620 gaa 622
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 822
Length adjustment: 9
Effective length of query: 414
Effective length of database: 813
Effective search space: 336582
Effective search space used: 336582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
