BAC Information

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BAC

Clone NameMSMg01-128L13
Chromosome9 (Build37)
Map Location 68,178,441 - 68,178,672
singlet/doubletsinglet
Overlap genenone
Upstream geneTln2, LOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c, LOC100041451
Downstream geneRora, 9530091C08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128L13.T7 (MSMg01no128_l13.b1)MSMg01-128L13.TJ (MSMg01no128_l13.g1)
ACCAG336917AG336918
length693692
length of high quality
(start - end)
475 (50 - 524)242 (77 - 318)
definitionCHROMAT_FILE: MSMg01no128_l13.b1 PHD_FILE: MSMg01no128_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:54 2005CHROMAT_FILE: MSMg01no128_l13.g1 PHD_FILE: MSMg01no128_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTGACTACGAATCTCTAATGGCCGAGAAGTACTTAAAGAAA
TGTTTAACATTCTCAATCACCAGCCAAATGCAAATCAAAACAACTCCAAA
ATTTCATCTTATACCCAACAGAATGGATAAGATAAAAAACTCAAGTGACA
ACTCATGCTGGTGAGGATGTGGAACAAGGGGAACACTTCTCCATTACTGC
TGGGAGTGCAAACTTGTACAACCACTTTGGAAATCAATTTGGTGGTTTCT
CAGAAAACTGGAAATAGATCTACCTCTAGACCCAGCTGTAGCACTCCTGG
GCATATACCCAGAAGAAACTTCACAATACCACTAGGATACTTGCTCAAAC
ATGTTCACAGTAGCTCCACTTGTAATAGCCAGAAACTGGAAACAACCTAG
ATGTCCCTCACGTGAAGAATTGATAAAGTGTGATACATTTACACAATGGA
GTAAATGTGTCCTTTAAAAACAAAGATATCGTGAAATTGTCAGGCAAATG
GATGGAACCAGAAAAGATCATCCTGAATGAGGTAACCCAGACCCAGAAAA
ACACATGTGGTATGTACTCACTTGCAAGTGGACCTTAGTCATAAAGTATT
AGATAATCTTGCTACAAACCACAGACCCTTAGATACTAAGTAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAACCACATAAATAAATAGAAGGC
AATTAGAAGTTTGAAGTAAGAATCTGGGTAGGATTACCGAGAAATGTTTG
ATGGTGTACATTATTGCTTCCTCAAAACATAGACTTACTTTTAGCCATTA
GAAGTATATGTATAACAACATATGTATATATATATACACATATACACATA
TACACATATACACATAGACATATTTTCGTCTATATAAAAGAGTTCCAGAA
GCTTTCCCAAGAAAGCGGTGATAGTGGGAGGGGATCTACAAGCAAGAGAG
AGAGATACTTTCCTGTATGCCCTACTGTATTATTTGATTTTTTTCTACTA
CACTTGTTATTACTCCCCCAATAAAACAATGTTAATGGGACAATAAGAGA
TGGATTTGTTGGGTTTTTTTTAAGTAGCAGATGTCAAGAAATGCTTAATG
GGACCGCAGCATCTTTTAGGGTAGCATGAAATAGAACAAGATGAGGAGAA
AGGACAAAAATGGATGCCGCCAGCAGCACTTACCAGCAGGCAGTACTTTT
TTTTTTAGCAGGTTGCCATATATTTTTATGATGGACAAGCATAATTTTAA
ACATCATTAGCTGGGATAATCAAGATCTAGGCTCCAGACTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_l13.g1 MSMg01no128_l13.g1 CHROMAT_FILE:
MSMg01no128_l13.g1 PHD_FILE: MSMg01no128_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:54 2005
         (242 letters)



>mm_chr9_68178330_68178971
          Length = 642

 Score =  418 bits (216), Expect = e-121
 Identities = 231/242 (95%), Gaps = 10/242 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaccacataaataaatagaaggcaattagaagtttgaagtaagaatctgggtaggatta 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 343 caaccacataaataaatagaaggcaattacaagtttgaagtaagaatctgggtaggatta 284

                                                                       
Query: 61  ccgagaaatgtttgatggtgtacattattgcttcctcaaaacatagacttacttttagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ccgagaaatgtttgatggtgtacattattgcttcctcaaaacatagacttacttttagcc 224

                                                                       
Query: 121 attagaagtatatgtataacaacatatgtatatatatatacacatatacacatatacaca 180
           ||||||||||||||||||||||||||||||||||||||          ||||||||||||
Sbjct: 223 attagaagtatatgtataacaacatatgtatatatata----------cacatatacaca 174

                                                                       
Query: 181 tatacacatagacatattttcgtctatataaaagagttccagaagctttcccaagaaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 tatacacatagacatattttcgtctatataaaagagttccagaagctttcccaagaaagc 114

             
Query: 241 gg 242
           ||
Sbjct: 113 gg 112


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)