BAC Information

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BAC

Clone NameMSMg01-129D23
Chromosome9 (Build37)
Map Location 54,112,929 - 54,113,403
singlet/doubletsinglet
Overlap genenone
Upstream geneExph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln, LOC100038996, Elmod1, Tnfaip8l3, Cyp19a1
Downstream geneLOC100039064, Gldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129D23.T7 (MSMg01no129_d23.b1)MSMg01-129D23.TJ (MSMg01no129_d23.g1)
ACCAG337305AG337306
length695692
length of high quality
(start - end)
224 (130 - 353)472 (65 - 536)
definitionCHROMAT_FILE: MSMg01no129_d23.b1 PHD_FILE: MSMg01no129_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:35 2005CHROMAT_FILE: MSMg01no129_d23.g1 PHD_FILE: MSMg01no129_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
AACTGATGCAAACTGAATGACTGAGAAGTACCTGAAAAAATGTTCAACAT
CCTTAATCATCTTTGACCATGAAATCAAAACAACCTTGAGATTCCACCTC
ACACCAGTCAGGATGGCTAAGATTAAAAATTCATGTGACAGCAGATGCTG
GCGTGGATGTGGAGAACGAGGAACACTCCTCCATTATTGGTGGGATTGCA
GGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTG
AACATAGTACTACTGGATAATCCAGCAATACCTCTCCTGGGCATATACCC
AGAAGATGTTCCACCTGCCCCCAAGAACACATGCTCCACTATGTTCATAG
CAGCCTTATCCACCATAGACAGAAACTGGAAAGAACCCAAATGACCCTCA
ACAGAGTAATGGATACAGAAACTGTGGTACATTTACACAATGGAGTACTA
CTCAGCTATTAAAAACAATGAACTTACAAAATTCTTAGGCAAATGGATGG
ATCTGGATGATGTCATCCTGAGTGAGGTATTCCAATCACAAAAGAACACG
CATAATATGCACTCACTGATAAGTGGATATTAGCCCAGAACCTTAGAATA
CCCAAGATATTATTTGCAAATAATATTGCCACTCATGAAGAACGA
CGATGCTAGGAGAGGCTGGCGGCGCCTGGTCCCAAATTTAGGTGACCTAT
AGAATTTCCCCGGAATTCACTTTATCTACGCATCTTTGTTTTATCCTTTG
TGAGTTGTTCTTGCCACGCCAAAGTTTAGAGAAGGACATAGTGAGTGCAT
GCCTGTAATCCTAGCACTTGGTGGTGGTAAGGTGTCCTAGAGCTCAGGAC
CAACCCCAGTGAGCTACGTAGTGAATTGCAGGCCACCCTGGGATACATGA
GATCTCAACAATACTATCCCAGAGTGACTGTTTTCCTTCTCAGGATTTGG
AATATTCTGCCTTCTGACCTAGGTAGCTAGAGAGAAAAAGAAAGCAAGCT
TTGATACTAGATATCACTTGGCTGTGTACTAGCAATGTGATCTTGGGATA
ATTTAGCTTCTCTCAAACCTGTCATCCTTTAAAAGAGAATAGCAGTGCTT
ATCTTGATGACATTGTGAAGATATATCATCTATGAAGTATCTGATACAAT
ATCACTCTCCTCCAATTCTTATATAAGATGAGCAAGACAGTAGACAGGTA
ATGTTGGGTAGTTTGAGACATAGCCCTTGGACCATAGCTATGTCACTGAT
AAAATTGAGTTGTAGACATGATTTTTGCAAGATGATTGAGAACTGATGAT
AACAGAGTTCATCACAGCATTGGGCTATTGGAAAACCATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_d23.g1 MSMg01no129_d23.g1 CHROMAT_FILE:
MSMg01no129_d23.g1 PHD_FILE: MSMg01no129_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:36 2005
         (472 letters)



>mm_chr9_54112729_54113600
          Length = 872

 Score =  864 bits (447), Expect = 0.0
 Identities = 467/475 (98%), Gaps = 3/475 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcactttatctacgcatctttgttttatcctttgtgagttgttcttgccacgccaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||
Sbjct: 201 attcactttatctacgcatctttgttttatcctttgtgagttgttcaagccaggccaaag 260

                                                                       
Query: 61  tttagagaaggacatagtgagtgcatgcctgtaatcctagcacttggtggtggtaaggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttagagaaggacatagtgagtgcatgcctgtaatcctagcacttggtggtggtaaggtg 320

                                                                       
Query: 121 tcctagagctcaggaccaaccccagtgagctacgtagtgaattgcaggccaccctgggat 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 tcctagagctcaggaccaaccccagtgagctacatagtgaattgcaggccaccctgggat 380

                                                                       
Query: 181 acatgagatctcaacaatactatcccagagtgactgttttccttctcaggatttggaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatgagatctcaacaatactatcccagagtgactgttttccttctcaggatttggaata 440

                                                                       
Query: 241 ttctgccttctgacctaggtagctagagagaaaaagaaagcaagctttgatactagatat 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 ttctgccttctgacctaggtagctagagagaaaaagaaagcaaggtttgatactagatat 500

                                                                       
Query: 301 cacttggctgtgtactagcaatgtgatcttgggataatttagcttctctcaaacctgtca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacttggctgtgtactagcaatgtgatcttgggataatttagcttctctcaaacctgtca 560

                                                                       
Query: 361 tcctttaaaagagaatagcagtgcttatcttgatgaca---ttgtgaagatatatcatct 417
           ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||
Sbjct: 561 tcctttaaaagagaatagcagtgcttatcttgatgacaacattgtgaagatatatcatct 620

                                                                  
Query: 418 atgaagtatctgatacaatatcactctcctccaattcttatataagatgagcaag 472
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgaagtatctgatacaatatcactctcctccaattcttatataagatgagcaag 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)