BAC Information

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BAC

Clone NameMSMg01-130M12
Chromosome9 (Build37)
Map Location 30,095,839 - 30,096,517
singlet/doubletsinglet
Overlap genenone
Upstream geneHnt
Downstream geneSnx19, LOC666478, Adamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130M12.T7 (MSMg01no130_m12.b1)MSMg01-130M12.TJ (MSMg01no130_m12.g1)
ACCAG338448AG338449
length6931,176
length of high quality
(start - end)
305 (49 - 353)680 (85 - 764)
definitionCHROMAT_FILE: MSMg01no130_m12.b1 PHD_FILE: MSMg01no130_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:45 2005CHROMAT_FILE: MSMg01no130_m12.g1 PHD_FILE: MSMg01no130_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCAACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTTACCTCTGTACCCGCCTACCCCACCCCCTGCCTTAT
TTTATTTTATTTTATTTTTTTTGCCCGGGTTTCTCTGTATAGCCCTAGCT
GTCCTGGAACTCACTCTGTAGACCAGGCTGGTCTTGAACTCAGAAATCCG
CCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCACCATCACACC
TGGCTGTACCCCATTTTTAATGGGGTTATTTGAAATTCTGGAGTCCAGCT
TCTTGAGCTCTTTGTATATATTGTATATTAGTTCCCTATCAGATTTAGGA
TTGGTAAAAATTTTTTCTCCCCCCCCCCCCGGCCTTTTTGTCTTATTGAC
GGAGTCTTTTGCCTTACCCCCTTTACCATAAAACATCTTGGTCCTATATT
TATATAATTATCATGAGTCAAATTCCTGTTTCAGGCCAAAGCCTCATAAT
GGCCTATAAGGCCACATCTCCTCATGTTTTTACCCTGGCTATTTCATTGT
GATCCTCTGTAGTCTGAGACATGACCACCATGACCATGCTCCTGCAAGGC
TTTTGAACCTCCTTTCTTTTTTAGCGAACTTCCAGCGCTTACCCTGGATA
CCCACGTGGCCCCCTTTCACCACCCTTTTCTGTACAGTTTTCA
NCGGATCTNTNNNNAAACAAGGATGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCTTTATACATTCTCATTAAGGAGA
TCACTATTCACTCTCTCATTATATCCTGCATTCAGCATGCTCATGAGCTT
AACTGTTTAGGGTGCACAGGATACTGCCACATGGAAACAAGCTAAATAAT
AATGCAACACATTCTAAGTGATATGGTTTGACAGCTGGGCCCTAGGTCAG
AAGTGAACTCTGCAAACACCAGATGGAAGGCCCAAGCATCTTACTGAGGG
GACTGCAGAGTGGACATAAGGGAATGGCATACCGTAGTAGCTGACGTAGA
CAGTGAAGGCTTGGTAGCATACAGGAGATTAGCCATGCTCTCCTTCCTGC
ACTGATATCTGGATGTTTGTGAAACACAGGCAATGTGTGACTCCTTGGTA
AGTTGCCTGGGAAGGAAGACAAGGAGGAAAGCAAGGCTATGACTCCTTGA
TGCCTCCCTCCATGAGCCATGAAGGCTCCAAAGCTCAATCCAGTGGAAGA
ACGACTACAAAAGAGAAGAAATTAAAGAATGTAGGGGAGATATGGTTGTT
TTATTTATTTGTTTGTTTGTTTGTTTCCTGNAGAACCCATGGAAACCTCA
GGGAACATGAAACATTGGAACTGGGTTGTGGGTCTCCCTTCTCGCCAAGG
TCATTGGCCACCAGCCCACAAGACAAAGGAAGCAGAACCAACAAATAGGG
TTTCAGATGGCCATGAGTACAAACAGTAATAATGACACACTGAGAGCAAC
TTCAGAGAGACAGATCAACATTGCTTGTGGTGAATCAAGAGTTATATAGT
TTTGGGTTAAGAGGGAAGGAATACCCAGGTTGGGCAATGTTCATCGTTTG
AAAGTTAAGTTTCTGACCTGCCTCTTTAACCGGGTAAACTTTCCTGAAAC
TTAATGCTTACTGAAAAAGTTTTTACCTTCAAATGTATTCGAACCCTTAT
TCTACCAATGGTATTTTACTTCCTCTGGTTAGGTTTTTTCCTCTATTCTT
TGCTGACCCCCTCTGGGATTCCCCCCATGAAAAAAACCCCTTTATCCTCT
TTGTTCACCTTCCGCTTTTCTCGTCTCTTTCTCTTTTTTATTCCTAATTT
CTCTTTTTTATTAAACATGTCTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_m12.g1 MSMg01no130_m12.g1 CHROMAT_FILE:
MSMg01no130_m12.g1 PHD_FILE: MSMg01no130_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:45 2005
         (680 letters)



>mm_chr9_30095647_30096725
          Length = 1079

 Score = 1091 bits (564), Expect = 0.0
 Identities = 651/689 (94%), Gaps = 19/689 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctcattaaggagatcactattcactctctcattatatcctgcattcagcatgctcat 60
           |||||||||||||||||||||||||||||||| |  | ||||||||||||| ||||||||
Sbjct: 193 attctcattaaggagatcactattcactctctgaagagatcctgcattcagtatgctcat 252

                                                                       
Query: 61  gagcttaactgtttagggtgcacaggatactgccacatggaaacaagctaaataataatg 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gagcttaactgcttagggtgcacaggatactgccacatggaaacaagctaaataataatg 312

                                                                       
Query: 121 caacacattctaagtgatatggtttgacagctgggccctaggtcagaagtgaactctgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 caacacattctaagtgatatggtttgacagctgggccctaggtcagaagtgaactctgca 372

                                                                       
Query: 181 aacaccagatggaaggcccaagcatcttactgaggggactgcagagtggacataagggaa 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 373 aacaccagatggaaggcccaagcatcttgctgaggggactgcagagtggacataagggaa 432

                                                                       
Query: 241 tggcataccgtagtagctgacgtagacagtgaaggcttggtagcatacaggagattagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tggcataccgtagtagctgacgtagacagtgaaggcttggtagcatacaggagattagcc 492

                                                                       
Query: 301 ---a-----tgctctccttcctgcactgatatctggatgtttgtgaaacacaggcaatgt 352
              |     ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 493 gtgaggagctgctctccttcctgcactgatgtctggatgtttgtgaaacacaggcaatgt 552

                                                                       
Query: 353 gtgactccttggtaagttgcctgggaaggaagacaaggaggaaagcaaggctatgactcc 412
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 553 gtgactccttggtaagttgcctgggaaggaagacaaggaggaaagcaaggttatgactcc 612

                                                                       
Query: 413 ttgatgcctccc-tccatgagccatgaaggctccaaagctcaatccagtggaagaacgac 471
           ||||||| |||| || ||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 613 ttgatgc-tcccctc-atgagccatgaagactccaaagctcaatccagtggaagaatgac 670

                                                                       
Query: 472 tacaaaagagaagaaattaaagaatgtaggggagatatggttgttttatttatttgtttg 531
           || |||| ||||||||| ||||| |||||||||||||||||||||||||||        |
Sbjct: 671 tataaaaaagaagaaatgaaagattgtaggggagatatggttgttttattt--------g 722

                                                                       
Query: 532 tttgtttgtttcctgnagaacccatggaaacctcagggaacatgaaacattggaactggg 591
           ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 723 tttgtttgtttcctggagaacccgtggaaacctcagggaacatgaaacattggaactggg 782

                                                                       
Query: 592 ttgtgggtctcccttctcgccaaggtcattggccaccagcccacaagacaaaggaagcag 651
           |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 783 ttgtgggtctcccttctcgccagggtcattggccaccagcccacaaggcaaaggaagcag 842

                                        
Query: 652 aaccaacaaatagggtttcagatggccat 680
           |||||||||||||||||||||||||||||
Sbjct: 843 aaccaacaaatagggtttcagatggccat 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1079
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1069
Effective search space:   716230
Effective search space used:   716230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)