Query= MSMg01no132_g20.b1 MSMg01no132_g20.b1 CHROMAT_FILE:
MSMg01no132_g20.b1 PHD_FILE: MSMg01no132_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:56 2005
(345 letters)
>mm_chr9_11604280_11605025
Length = 746
Score = 588 bits (304), Expect = e-172
Identities = 334/344 (97%), Gaps = 4/344 (1%)
Strand = Plus / Plus
Query: 5 gaattcaccactactct-acaag-atttttacttgcccagatcattgatggtatagaatt 62
||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccactactctga-aaggatttttacttgcccagatcattgatggtatagaatt 263
Query: 63 gcactgggaaatgggagattcatgcttactaccacttttagtatgtacagtgacacctga 122
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 264 gcactgggaaatgggagattcatgcttactaccacttttagtatgtgtagtgacacctga 323
Query: 123 aggaaggcattggtattacctgcaaagaactgaactcagaaccccagcagaggatgacct 182
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 324 aggaaggcattggtattacctgcaaagaactgacctcagaaccccagcagaggatgacct 383
Query: 183 taagtggtatcaatgggaggagaggcccttggtcctctgaaggcttaatgccccagggta 242
|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 384 tatgtggtatcaatgggaggagaggcccttggtcctctgaaggcttgatgccccagtgta 443
Query: 243 ggg-aatcccagggcagtgaggtaggtgtggatgggtgggtgagtgggggagcaccttat 301
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggggaatcccagggcagtgaggtaggtgtggatgggtgggtgagtgggggagcaccttat 503
Query: 302 agaagcagggggatgggaatgggataggagatttgcagagggga 345
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agaagcagggggatgggaatgggataggagatttgcagagggga 547
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 746
Length adjustment: 9
Effective length of query: 336
Effective length of database: 737
Effective search space: 247632
Effective search space used: 247632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_g20.g1 MSMg01no132_g20.g1 CHROMAT_FILE:
MSMg01no132_g20.g1 PHD_FILE: MSMg01no132_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:56 2005
(640 letters)
>mm_chr9_11670845_11671882
Length = 1038
Score = 1170 bits (605), Expect = 0.0
Identities = 633/647 (97%), Gaps = 9/647 (1%)
Strand = Plus / Minus
Query: 1 taaaatacagactgttttagaaaccttgaattcttttcaggc-------ttttttttttt 53
|||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 887 taaaatacagactgttttagaaaccttgaattcttttcaggctttttttttttttttttt 828
Query: 54 ttaatataacaatccagggaaagagaaaagccattcctcctgtttgaggctgaggctttc 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 ttaatataacaatccagggaaagagaaaagccattcctcctgtttgaggctgaggctttc 768
Query: 114 ttctttacccatcaggatgaacagctttatttgctaaatggcagcaggcattaagagata 173
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 767 ttctttacccatcaggatgaacagcttcatttgctaaatggcagcaggcattaagagata 708
Query: 174 cctttgttatttcctttgacttgcttctgtcaaggagatggaaagggattcctggcagaa 233
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 707 cctttgttatttcctttgacttgcttctgtcaaggcgatggaaagggattcctggcagaa 648
Query: 234 agcccccacccactgtgatattgaagagcaagaacactgaggagcttcttaaattgcatc 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 agcccccacccactgtgatattgaagagcaagaacactgaggagcttcttaaattgcatc 588
Query: 294 agtttctctttactccacactgctccctaaaagaaaacccctacttttctctggcctgtg 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 agtttctctttactccacactgctccctaaaagaaaacccctacttttctctggcctgtg 528
Query: 354 atggaagctgctgtgttgggcagaaacttcacttgagggctctgagagctagttcactct 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 atggaagctgctgtgttgggcagaaacttcacttgagggctctgagagctagttcactct 468
Query: 414 tactgagttcagtgaaattttacagatacagtgcagtgcatcatttgacatgtacagcaa 473
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tactgagttcagtgaaatttgacagatacagtgcagtgcatcatttgacatgtacagcaa 408
Query: 474 gcccagtgctagggaaatgtctgctttagtatttaaatgaatatcataaactctctcacc 533
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 407 gcccagtgctggggaaatgtctgctttagtatttaaatgaatatcataaa--ctctcacc 350
Query: 534 agtcacagtatacatatcttccaagatttacttgaggtttaatatgtagaaagttttact 593
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 agtcacggtatacatatcttccaagatttacttgaggtttaatatgtagaaagttttact 290
Query: 594 ctttgaaatatatatgccaaattttaaatatacgtattttcagaatt 640
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ctttgaaatatatatgccaaattttaaatatacgtattttcagaatt 243
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1038
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1028
Effective search space: 647640
Effective search space used: 647640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
