BAC Information

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BAC

Clone NameMSMg01-133F22
Chromosome9 (Build37)
Map Location 19,244,562 - 19,245,199
singlet/doubletsinglet
Overlap genenone
Upstream geneMbd3l2, Zfp558, Mbd3l1, Muc16, Olfr24, Olfr828, Olfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122
Downstream geneOlfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133F22.T7 (MSMg01no133_f22.b1)MSMg01-133F22.TJ (MSMg01no133_f22.g1)
ACCAG340369AG340370
length700718
length of high quality
(start - end)		663 (38 - 700)644 (73 - 716)
definitionCHROMAT_FILE: MSMg01no133_f22.b1 PHD_FILE: MSMg01no133_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:10 2005CHROMAT_FILE: MSMg01no133_f22.g1 PHD_FILE: MSMg01no133_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTC
CATCACCTGTTTGGTCTTGTTTTCCTGCAATTCTTTAAGGGATTTTTGTG
TTTCCTCTTTATGGTCTCCTACCTGTTTAGCTGTGTTCTCCTGTATTTCT
TTAAGTGAGTTATTAAAGTCCTACTTGATGTCCTCTACCATCATCATGAG
ATATGCTTTTAAATCCCAGTCTAGTTTTTCGCGTGTTTTGGGGTGCCCAG
GACTGGGTGGGGTGGAAGTGCTGCATTCTGATGATGGTGAGTGGTCTTGG
TTTCTGTTAGTAAAATTCTTACTTTTGCGTTTTGCCATCTGGTAATCTCT
GGAGTTAGTTGTTTTACCTGTATCTGGTTAGATATTGTTCCTCAGGTTTT
TATGTTAGCCTCTATCAGCAGACCTGGTAGACTAGATCTCTCCTGAGCTT
CAGTGTTCAGAGTACTCTCTTAAGGTAGGCTCTCCTCTTGCAGGGAAGGT
GCCCAGATGTTCAAGCCTGCCTCCTGGCAGAAGTTGTGATCCACTCACAG
AGGTCTTAATATCCCGTGGAGTGTCCTGTATATACCTTACGTGTGTCCAC
AGACTCCACGCCCCAGGTACCCCAGTGCTGGCGTGGACCGGAAGGGACTT
GTGCCCCTGATCAGGCCTGGTTTTCTGCTTCCCTAATTAATGCAGTCTCA


CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCCTTTCAGTAGACATGGGCATTAAGG
ATTTGCACACTTGGGATTATGATGGCGTTGTCATGCTAGTATAATTAAAA
TACTTGAATACTGAGCTCCAGAGACAGAAAAACTATAGAAGTCTCTCTGT
TGTTCCTTTAGGTTTATTATGCCAACCTTAGAACAATATCCAAGCTTTTT
CCTACAAATGATACTTCTTAATGAAAAGTCAATTGATCATGCGATGTTTT
ATGACTTTCACAAGAACACATTTATGATCAACATTCAGGTAAGATGCTTA
TCATGACTCACTTGAATCTAAGAAGACAACTAAAATCCCTTTAGAAATAT
ATGGAATAGTAGCTGGACTTTATTAGTAGGATATCACCTTAGTTATTGCT
AGGAAGTCTATAAAAATAGATACAGTAAAGAATCATCTGGAAAGAATATA
AAGCTTCTCACTAATCTGTTTTCAACCTGACCCATGCTTATATACATCCG
CACTAACGGTTACCAGCCTCCATTGGGCTACTCTAAGTAGTATCAATTCC
CTGTCAAACAAAACAGTGTTTCTTATAGACCATGATGTTTACTATGAAAC
CTTGCAAATTGTGCTTTCTTCATTGTTCATACATTTAGGAGGGATTTTAT
TAAAGGATTAATTCATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_f22.g1 MSMg01no133_f22.g1 CHROMAT_FILE:
MSMg01no133_f22.g1 PHD_FILE: MSMg01no133_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:10 2005
         (644 letters)



>mm_chr9_19244362_19245399
          Length = 1038

 Score = 1203 bits (622), Expect = 0.0
 Identities = 636/644 (98%), Gaps = 6/644 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccctttcagtagacatgggcattaaggatttgcacacttgggattatgatggcgttgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccctttcagtagacatgggcattaaggatttgcacacttgggattatgatggcgttgtc 260

                                                                       
Query: 61  atgctagtataattaaaatacttgaatactgagctccagagacagaaaaactatagaagt 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 atgctagtataattaaaatacttgaatactgagccccagagacagaaaaactatagaagt 320

                                                                       
Query: 121 ctctctgttgttcctttaggtttattatgccaaccttagaacaatatccaagctttttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctctgttgttcctttaggtttattatgccaaccttagaacaatatccaagctttttcc 380

                                                                       
Query: 181 tacaaatgatacttcttaatgaaaagtcaattgatcatgcgatgttttatgactttcaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacaaatgatacttcttaatgaaaagtcaattgatcatgcgatgttttatgactttcaca 440

                                                                       
Query: 241 agaacacatttatgatcaacattcaggtaagatgcttatcatgactcacttgaatctaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaacacatttatgatcaacattcaggtaagatgcttatcatgactcacttgaatctaag 500

                                                                       
Query: 301 aagacaactaaaatccctttagaaatatatggaatagtagctggactttattagtaggat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagacaactaaaatccctttagaaatatatggaatagtagctggactttattagtaggat 560

                                                                       
Query: 361 atcaccttagttattgctaggaagtctataaaaatagatacagtaaagaatcatctggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcaccttagttattgctaggaagtctataaaaatagatacagtaaagaatcatctggaa 620

                                                                       
Query: 421 agaatataaagcttctcactaatctgttttcaacctgacccatgcttatatacatccgca 480
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaagataaagcttctcactaatctgttttcaacctgacccatgcttatatacatccgca 680

                                                                       
Query: 481 ctaacggttaccagcctccattgggctactctaagtagtatcaattccctgtcaaacaaa 540
           |||||      |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctaac------cagcctccattgggctactctaagtagtatcaattccctgtcaaacaaa 734

                                                                       
Query: 541 acagtgtttcttatagaccatgatgtttactatgaaaccttgcaaattgtgctttcttca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 acagtgtttcttatagaccatgatgtttactatgaaaccttgcaaattgtgctttcttca 794

                                                       
Query: 601 ttgttcatacatttaggagggattttattaaaggattaattcat 644
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ttgttcatacatttaggagggattttattaaaggattaattcat 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1038
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1028
Effective search space:   651752
Effective search space used:   651752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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