Query= MSMg01no134_k23.b1 MSMg01no134_k23.b1 CHROMAT_FILE:
MSMg01no134_k23.b1 PHD_FILE: MSMg01no134_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:20 2005
(688 letters)
>mm_chr9_111025485_111026575
Length = 1091
Score = 1249 bits (646), Expect = 0.0
Identities = 680/692 (98%), Gaps = 5/692 (0%)
Strand = Plus / Plus
Query: 1 ttctcccatgaaagagttatgaaatcatcct-ttttatttaattttcttcattttatttt 59
|||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||
Sbjct: 201 ttctcccatgaaagagttatgaaatcata-tattttattaaattttcttcattttatttt 259
Query: 60 gtatgcatgtgggtgtgggtatgtaagttagagaacaagttgaaagacttgggtctccta 119
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gcatgcatgtgggtgtgggtatgtaagttagagaacaagttgaaagacttgggtctccta 319
Query: 120 ccatctggctccagaaagatcaaattctggttgtgaaacttagggcaagcaagtgagcct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccatctggctccagaaagatcaaattctggttgtgaaacttagggcaagcaagtgagcct 379
Query: 180 tctggccctgaagttgtacctttaaactcttgctttttagcagactacatagctgtctct 239
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tctgtccctgaagttgtacctttaaactcttgctttttagcagactacatagctgtctct 439
Query: 240 ttgtgctgtgtagtgaatggaagcgttggtgttctctatgtttagtgagcacttaggttt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttgtgctgtgtagtgaatggaagcgttggtgttctctatgtttagtgagcacttaggttt 499
Query: 300 aaagttctctaggtgatctcacttctttgactagaaagctgttgaacaactta--gttac 357
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 500 aaagttctctaggtgatctcacttctttgactagaaagctgttgaacaacttactgttac 559
Query: 358 accctctgaccaaggttcatgtcctggctcactgctgagctgttgttccacagtcaaggg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 accctctgaccaaggttcatgtcctggctcactgctgagctgttgttccacagtcaaggg 619
Query: 418 tttctgaaggattcagcttgtagctgtactttataggtgtgagcctatacatggttgctg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tttctgaaggattcagcttgtagctgtactttataggtgtgagcctatacatggttgctg 679
Query: 478 gtcttttgtgttacacgaggttatcacttcaggctgtttacttctggggtcattaacatt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gtcttttgtgttacacgaggttatcacttcaggctgtttacttctggggtcattaacatt 739
Query: 538 tcatggtgatgtctttaggattcagtgtaagaagtgagcaatggttttttttcttctgtt 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tcatggtgatgtctttaggattcagtgtaagaagtgagcaatggttttttttcttctgtt 799
Query: 598 atttggtttattcctattatctcttcctattctcgggttttcttccctagaacaataaaa 657
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 800 atttggtttattcctattatctcttcctattctcgggttttcctccctagaacaataaaa 859
Query: 658 caaaacaaag-aagagaactttcggtgaactg 688
||||||||| ||||||||||| |||||||||
Sbjct: 860 caaaacaaaacaagagaactttgggtgaactg 891
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1091
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1081
Effective search space: 732918
Effective search space used: 732918
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no134_k23.g1 MSMg01no134_k23.g1 CHROMAT_FILE:
MSMg01no134_k23.g1 PHD_FILE: MSMg01no134_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:20 2005
(725 letters)
>mm_chr9_111145350_111146474
Length = 1125
Score = 1350 bits (698), Expect = 0.0
Identities = 719/726 (99%), Gaps = 1/726 (0%)
Strand = Plus / Minus
Query: 1 agttcttttccacagccttaagggctgccctgaaggtcatagcatttccgg-tttgctga 59
||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||
Sbjct: 972 agttcttttccacagccttaagggctgtcctggaggtcatagcatttccggttttgctga 913
Query: 60 ggtattagccgcactttcgcctcctggactcatgttgtctctgattatcatggagtcttt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 ggtattagccgcactttcgcctcctggactcatgttgtctctgattatcatggagtcttt 853
Query: 120 agtgttactagggaggacgttcctcagaggaatgtgaaagcatgtacataattatacagt 179
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 852 agtgttactagggaggacgttcctcagaggaatgtgaaaacatgtacataattatacagt 793
Query: 180 cagcaaccatcagcactggtggaggaggcccacaccctgctggcttgttccaggggcagg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 cagcaaccatcagcactggtggaggaggcccacaccctgctggcttgttccaggggcagg 733
Query: 240 aatcctatcatgctgccgcttacacgaggcaagcatctgtggaacaggcctgggcatggt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 aatcctatcatgctgccgcttacacgaggcaagcatctgtggaacaggcctgggcatggt 673
Query: 300 tctgggaaggcagggtcttatacttcctagtgcatccaacaggaggctcacaatgacttt 359
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tctgggaaggcagggccctatacttcctagtgcatccaacaggaggctcacaatgacttt 613
Query: 360 ctgtgttaaggggtagctcctttggtgactgcctggttctcttatgttaaggttgccctc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ctgtgttaaggggtagctcctttggtgactgcctggttctcttatgttaaggttgccctc 553
Query: 420 caggatataccttacaagtgtccccaatactataatcagttattgctttaggttgtaaga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 caggatataccttacaagtgtccccaatactataatcagttattgctttaggttgtaaga 493
Query: 480 ctaaactttatcatcttgtcctgtatttatttatttatttacatatatattttttctctt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ctaaactttatcatcttgtcctgtatttatttatttatttacatatatattttttctctt 433
Query: 540 tattttcttttcttttattggatattttctttatttacatttcaaatgttatcccctttc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tattttcttttcttttattggatattttctttatttacatttcaaatgttatcccctttc 373
Query: 600 ccagtttcccctccagaaacctctttatcccatccctcctacccctgcttctatgagggt 659
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ccagtttcccctccagaaacccctttatcccatccctcctacccctgcttctatgagggt 313
Query: 660 gtttccccacccatccacccactctcacttccccaccctggcagtctcctacactggggc 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gtttccccacccatccacccactctcacttccccaccctggcagtctcctacactggggc 253
Query: 720 atcgag 725
||||||
Sbjct: 252 atcgag 247
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 725
Length of database: 1125
Length adjustment: 10
Effective length of query: 715
Effective length of database: 1115
Effective search space: 797225
Effective search space used: 797225
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
