CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCCGAGGTGCGCGGAA
TTCTCTTGTTTTCCACATAAATAGTGAGGATGCCCAGAGTGGAGGAGACA
ATGAAGACAGGATGGACAATCTGGAAAGGCCTGCTTCACGCAGACCAGAC
ACAGATACCTTCGTGGTCAACACTGAGCATGCAGTTTACAAAATGTTCAA
CATCCTTAATCATTTGGGAAATGCAAATCAAAACAACCCTGAGATTCCAC
CTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATG
CTGGCAAGGATGTAGAGATTTTATGAACATGTCTCCATTGTTGGTGGGAT
TGTAAGTTTGTACAACTGCTCTGGAAATCAGACGGTTCCTCAGAAAATTG
GACATAGTACTACCGGAGGATCCTGCAGTACCTCTCCTGGGCATATATCC
AGAAGATATTCCATCCAGTAAGAAGGACACATGCTCCACTATGTTCAATA
GCAGGCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTC
AACAGAGGAATGGATACAGATAATGTGGTACATTTACACAATGGAGTACT
ACTAAACTATTATAAAGAATGAATTTATGAAATTCCCAGCCAAATGGATG
GACCTGGTAGTCATCATCTTGAATGATGTAACCCAATTTCTACGGAACTC
TTCCTTTTTGCCCTCCCT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCGGTTATATCTCCTCTTGTTCTA
AACTTAGAAATGTGATTAAGTATGATGAATTTTAAGCCTCTACCTTATGA
TAGGGCACTACCATCTTCAACCAGACTCTTTTACTTGCTATCAGTTACTT
TGAATCCCAAGATCCTTGGTGTCATGTATTGCTCATCCCTCTGAGGACAA
AGACTCCAGTCCCAGAGAGGTCTTGGAAATACACTTCGACATCCTGTCAA
GAACAGTTCACTTTTGTATTGAAGAAGTATAGTCAAAACGTACCTTCTGT
ACTTATGCTACCATCTTTAATATGAGTATAAGTAGCTACTGTGAGATATT
TGTACTAAGAAAGAATGTTATTTTCAGGATTAATCAAAATCAAACAGCCT
TATTAGGCTCCTGTTCTGATATTGAAGGCCATATTAAACAACAACAAAAC
ATCATGTTCTTGTTCTCTGAAAGAATTTGAAATGCACTCTAACCAGCCCA
AAATCCTCGTTTTTTATGAAACCCAGGGTTGGATTTGAAGTAAGTTAATG
GGGTTCCTTTTCTTTAAAAAAATCTTTCGAAAAAAGGGGAGTTATAAGGT
TTTATTTTTTGGAAGGGAGAAGGTTCCTTCCAATTTACAATGGGGGGGGG
GTGTTCCCCTTATGTTCTTATGGCGAATTCCTCACTCN

Query= MSMg01no135_g12.b1 MSMg01no135_g12.b1 CHROMAT_FILE:
MSMg01no135_g12.b1 PHD_FILE: MSMg01no135_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:32 2005
         (274 letters)



>mm_chr9_33733870_33734543
          Length = 674

 Score =  412 bits (213), Expect = e-119
 Identities = 240/249 (96%)
 Strand = Plus / Plus

                                                                       
Query: 26  aatagtgaggatgcccagagtggaggagacaatgaagacaggatggacaatctggaaagg 85
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 aatagtgaggatgcccagagtggaggagacaatgaagacaggatggacaatctggaaagg 285

                                                                       
Query: 86  cctgcttcacgcagaccagacacagataccttcgtggtcaacactgagcatgcagtttac 145
           ||||||||| | ||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 286 cctgcttcatgaagaccagacacagataccttcatggtcaacactgagcgtgcagtttac 345

                                                                       
Query: 146 aaaatgttcaacatccttaatcatttgggaaatgcaaatcaaaacaaccctgagattcca 205
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 346 aaaatgttcaacatccttaatcattagggaaatgcaaatcaaaacaaccctgagattcca 405

                                                                       
Query: 206 cctcacaccagtcagaatggctaagatcaaaaattcaggtgacagcagatgctggcaagg 265
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||
Sbjct: 406 cctcacaccagtcagaatggctaatatcaaaaattcaggtgacagcagatgctgacgagg 465

                    
Query: 266 atgtagaga 274
           |||| ||||
Sbjct: 466 atgtggaga 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no135_g12.g1 MSMg01no135_g12.g1 CHROMAT_FILE:
MSMg01no135_g12.g1 PHD_FILE: MSMg01no135_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:32 2005
         (379 letters)



>mm_chr9_33819765_33820543
          Length = 779

 Score =  710 bits (367), Expect = 0.0
 Identities = 376/379 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcggttatatctcctcttgttctaaacttagaaatgtgattaagtatgatgaattttaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tcggttatatctcctcttgttctaaacttagaaatgtgattaagtatgatgaattttaag 520

                                                                       
Query: 61  cctctaccttatgatagggcactaccatcttcaaccagactcttttacttgctatcagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 cctctaccttatgatagggcactaccatcttcaaccagactcttttacttgctatcagtt 460

                                                                       
Query: 121 actttgaatcccaagatccttggtgtcatgtattgctcatccctctgaggacaaagactc 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 459 actttgaatcccaagatccttggtgtaatgtattgctcatccctctgaggacaaagactc 400

                                                                       
Query: 181 cagtcccagagaggtcttggaaatacacttcgacatcctgtcaagaacagttcacttttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 cagtcccagagaggtcttggaaatacacttcgacatcctgtcaagaacagttcacttttg 340

                                                                       
Query: 241 tattgaagaagtatagtcaaaacgtaccttctgtacttatgctaccatctttaatatgag 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 339 tattgaagaagtatagtcaaaacataccttctgtacttatgctaccatctttaatatgag 280

                                                                       
Query: 301 tataagtagctactgtgagatatttgtactaagaaagaatgttattttcaggattaatca 360
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 279 tataagtagctactgtgagatatttgtacaaagaaagaatgttattttcaggattaatca 220

                              
Query: 361 aaatcaaacagccttatta 379
           |||||||||||||||||||
Sbjct: 219 aaatcaaacagccttatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)