Query= MSMg01no138_j10.b1 MSMg01no138_j10.b1 CHROMAT_FILE:
MSMg01no138_j10.b1 PHD_FILE: MSMg01no138_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:40 2005
(439 letters)
>mm_chr9_28494820_28495658
Length = 839
Score = 795 bits (411), Expect = 0.0
Identities = 431/438 (98%), Gaps = 2/438 (0%)
Strand = Plus / Minus
Query: 3 ggaattctcttctgtcctnc-agtagcaaatatcccatagtgaaacctcaacacccagag 61
|||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ggaattctcttctg-ccttcaagtagcaaatatcccatagtgaaacctcaacacccagag 581
Query: 62 gatgtatggttcacttaccctgggatggcccattggccaagtggctgtcatattattttt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gatgtatggttcacttaccctgggatggcccattggccaagtggctgtcatattattttt 521
Query: 122 gacagcatgagttctatctaaacagaaattaaggataaattaacaggattaaaaagagag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gacagcatgagttctatctaaacagaaattaaggataaattaacaggattaaaaagagag 461
Query: 182 aaagaattgaaaagagaaaagaagaattgagtgaggcagcaagtaaatctctatttcaac 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 aaagaattgaaaagagaaaagaagaattgagtgaggcagcaagtaaatctctatttcaac 401
Query: 242 actatcttctaaagctgtttatgataaaaagaggattatggagctcaacttgcagctata 301
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 400 actatcttctaaagctgtttatgataaaaagaggattagggagctcaacttgcagctata 341
Query: 302 ttaaattaaatcccagacccctgttcacagtcacatgccggcctgagagcatcaatccca 361
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 340 ttaaattaaatcccatacccctgttcacagtcacatgcaggcctgagagcatcaatccca 281
Query: 362 acgtgacaaaatagcccctgggagaaggactcttcctggcagtgagccacttgcctctta 421
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 acgcgacaaaatagcccctgggagaaggactcttcctggcagtgagccacttgcctctta 221
Query: 422 taaactgttaaccgtggt 439
||||||||||||||||||
Sbjct: 220 taaactgttaaccgtggt 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space: 356900
Effective search space used: 356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no138_j10.g1 MSMg01no138_j10.g1 CHROMAT_FILE:
MSMg01no138_j10.g1 PHD_FILE: MSMg01no138_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:40 2005
(540 letters)
>mm_chr9_28340657_28341596
Length = 940
Score = 1013 bits (524), Expect = 0.0
Identities = 536/540 (99%)
Strand = Plus / Plus
Query: 1 caattagtgagggagatatacacaaaaagataactaataacacaatctttctaataacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caattagtgagggagatatacacaaaaagataactaataacacaatctttctaataacag 260
Query: 61 agagcaggagacaaattagtgataagataatcaagatcattgtagttccaaggaaaaggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagcaggagacaaattagtgataagataatcaagatcattgtagttccaaggaaaaggc 320
Query: 121 aattaaatttagctggaagtggggtataagctgccttccaaatcttagatctacttttaa 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattaaatttagctggaagtgggatataagctgccttccaaatcttagatctacttttaa 380
Query: 181 taggcaaataaaagaaaagagaggaccatctggttttctactccatcatgccattgaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taggcaaataaaagaaaagagaggaccatctggttttctactccatcatgccattgaaac 440
Query: 241 tatactctgaaacatttccaataacctctaattgctgtctctaataggctttcctctgcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatactctgaaacatttccaataacctctaattgctgtctctaataggctttcctctgcc 500
Query: 301 ttccgttcctactcgctttgcagattttgacttaaaaaacttcctctcattctggtttct 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttccgttcctactctctttgcagattttgacttaaaaaacttcctctcattctggtttct 560
Query: 361 gtaagagttttctgagtgcctgtgttatttctttggttggattttcctcctcctgtggca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaagagttttctgagtgcctgtgttatttctttggttggattttcctcctcctgtggca 620
Query: 421 tgaacctgggagatttagtgcagcaggttgcgtgtctgcccttaccctgacctttcttgc 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 621 tgaacctgggagatttagtgcagcaggttgtgtgtctgcccttaccctgacctttcttgc 680
Query: 481 ctcccattgcttgggtttagttttcacgtagagctagagcaaccaaggacactgacctgt 540
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 ctcccattgcttgggtttagttttcacgtagagctagagcaaccgaggacactgacctgt 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
