Query= MSMg01no141_b06.b1 MSMg01no141_b06.b1 CHROMAT_FILE:
MSMg01no141_b06.b1 PHD_FILE: MSMg01no141_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:04 2005
(665 letters)
>mm_chr9_24895343_24896407
Length = 1065
Score = 994 bits (514), Expect = 0.0
Identities = 552/570 (96%), Gaps = 9/570 (1%)
Strand = Plus / Minus
Query: 96 cctctgtgtatgtattgtatctttcagtttagtacgttaatgggattccaaaatgtgtga 155
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1065 cctctgtgtatgtattgtatcttccagtttagtacgttaatgggattccaaaatgtgtga 1006
Query: 156 gtgggtgggtttctgattcttgtgccttcttgtgtggcacgtttccttctgttgctttgc 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 gtgggtgggtttctgattcttgtgccttcttgtgtggcacgtttccttctgttgctttgc 946
Query: 216 cttgtctaactacaatgtgatggttttcgtttgatcttacataacaacagcaacagtagc 275
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 cttgtctaactttaatgtgatggttttcgtttgatcttacataacaacagcaacagtag- 887
Query: 276 aacaacaacaacaacaacaacaacaacaaacaaacaaaaaccaaggtgttttcttctctt 335
|||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 886 --------caacaacaacaacaacaacaaacaaacaaaaaccaaggtggtttcttctctt 835
Query: 336 gatacatttccagggacatgttttatagctgttgcttcactagggctaatatcaagtaaa 395
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 834 gataaatttccagggacatgttttatagctgttgcttcactagggttaatatcaagtcaa 775
Query: 396 aatgcacacacctttcttctctagtagctctgatttccaacggctgagaggtgctgtggg 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 aatgcacacacctttcttctctagtagctctgatttccaacggctgagaggtgctgtggg 715
Query: 456 aagtctgccgctcccttatcctgacatcagctaacagcctgtttatgtgtctccatcagc 515
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 aagcctgccgctcccttatcctgacatcagctaacagcctgtttatgtgtctccatcagc 655
Query: 516 ttctgggatgggcagacgagagggtatgcttagctcgacaaacaccacagctgaattcca 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ttctgggatgggcagacgagagggtatgcttagctcgacaaacaccacagctgaattcca 595
Query: 576 caacgatttacacatttcacagcagattgtttagacctagagcctaaacatcttcctctc 635
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 594 caacgatttacacatttcacagcagactgtttagacctagagcctaaacatcttcctctc 535
Query: 636 ctgaaactcaatacatatctttcgatgctg 665
||||||||||||||||||||||||||||||
Sbjct: 534 ctgaaactcaatacatatctttcgatgctg 505
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no141_b06.g1 MSMg01no141_b06.g1 CHROMAT_FILE:
MSMg01no141_b06.g1 PHD_FILE: MSMg01no141_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:05 2005
(667 letters)
>mm_chr9_24742936_24744005
Length = 1070
Score = 1133 bits (586), Expect = 0.0
Identities = 648/674 (96%), Gaps = 11/674 (1%)
Strand = Plus / Plus
Query: 1 tttataaggatccacttgaaataactcaccatcttccagaaggaaaaaccccaaa----- 55
|||||||||||||||||||||||||||| | |||||||||| ||||| |||
Sbjct: 201 tttataaggatccacttgaaataactcaaaagcttccagaagaaaaaa----aaaaaaaa 256
Query: 56 -gaacattttcttactgtgttttttaaagtgaaaaccacacttctcaagcatatctgaga 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 257 agaacattttcttactgtgttttttaaagtgaaaaccacacttctcaagcatatctaaga 316
Query: 115 aattacctaagcaggatgatggacatgcagtgtcttaaataggaactgagccttttgtaa 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aattacctaagcaggatgatggacatgcagtgtcttaaataggaactgagccttttgtaa 376
Query: 175 gtgcttgctccactgcaatagttcccaatggatctgagtttcttgtgctgatctgtggtg 234
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 377 gtgcttgctccacttcaatagtttccaatggatctgagtttcttgtgctgatctgtggtg 436
Query: 235 cagagagctctctagaaactagctgtggtcggttggaggacagagtggggaaccaagtcc 294
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 437 cagagagctctctagaaactagctgtggtcggttggaggagagagtggggaacaaagtcc 496
Query: 295 ttgaaggagaaggaactaagagtgaaggttaagaaaacagcatctgacacgccccacccc 354
||| |||||||||||||||||||||||| |||||||||||||||| ||| |||||||||
Sbjct: 497 ttggaggagaaggaactaagagtgaaggggaagaaaacagcatctggcactccccacccc 556
Query: 355 ctccaatgatttgatctctggaagggatgcacctggtaacaagagtaagcactggatagg 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ctccaatgatttgatctctggaagggatgcacctggtaacaagagtaagcactggatagg 616
Query: 415 acctgtttacagctttggtgatgtggctgtctctagaagagaagactgtccttgatttca 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 acctgtttacagctttggtgatgtggctgtctctagaagagaagactgtccttgatttca 676
Query: 475 gtgtctttaatactctttcaggtt-tctcaatatttcacatgcagccctgatgaaattca 533
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 677 gtgtctttaatactctttcaggttctctcaatatttcacatgcagccctgatgaaattca 736
Query: 534 aatagttaaaacatttagattagcagtctttgctgaccacatattaatgtgtccagttgg 593
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 737 aatagttaaaacatttagattagcagtctttgctgaccacatattaacgtgtccagttgg 796
Query: 594 aactcttacctcagaaaggttactgagcttcaggtatgtgggaaggtggatcgtgaaagg 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 aactcttacctcagaaaggttactgagcttcaggtatgtgggaaggtggatcgtgaaagg 856
Query: 654 tagactgatcctcg 667
||||||||||||||
Sbjct: 857 tagactgatcctcg 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1070
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1060
Effective search space: 696420
Effective search space used: 696420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
