BAC Information

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BAC

Clone NameMSMg01-142A08
Chromosome9 (Build37)
Map Location 71,640,853 - 71,788,738
singlet/doubletdoublet
Overlap geneTcf12
Upstream geneLipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2, Grinl1a, AA407270, LOC547043, LOC100040537, Cgnl1
Downstream geneEG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396, Prtg, LOC100040694, Pygo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142A08.T7 (MSMg01no142_a08.b1)MSMg01-142A08.TJ (MSMg01no142_a08.g1)
ACCAG346740AG346741
length1,1831,209
length of high quality
(start - end)		683 (51 - 733)653 (90 - 742)
definitionCHROMAT_FILE: MSMg01no142_a08.b1 PHD_FILE: MSMg01no142_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:01:08 2005CHROMAT_FILE: MSMg01no142_a08.g1 PHD_FILE: MSMg01no142_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:01:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,640,853 - 71,641,532)(71,788,211 - 71,788,738)
sequence
CCTGTCCTNNNNNCGCAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTATCTGCAGAGAACTACCCTTTATCTCCCCCTTGGTTATC
TGGGTTACCTGAGTATCCCCTTGTGGGTATTTTATCGCATTGTGTGGCTA
TAATACAAGCTAAGCATCTCTAATATGGGCTTTGGGTTCATACAGACATC
TCAGATTCTAACATAAGATCCAAAATTCAAAACTCTGTAAAATTTGAAAC
TTTCTTATTACCAGTATCATGTCATAAACACAGAATTCCACATCATGAAA
CCTCATATCACACCCAACAGTATTAAAACTGTAAAATTAACCTCAGGATA
TACATTTAAAGGCACATAGTGAACACACGTATTTAGTGTTTGGTCTCAGC
TTAGCCACTATAGACCTCATTATGTAAATACAAATATTCAGAAACCTTTC
AAGGCTGACTCACTTCTGGTCCCACACATTTTCATGTTGTTATTACTTAT
TTTATCCAAATTATTCTAGCTTCCCTCATTGCAGGTTCCTCAGGTTGGGT
CCACACATCCTTTTTCATTCACTTTCTGAGATAGAGTCTTAGTGGCTGGC
CTGGAACTTGCCATCTTCAACCTCTGGTGTGTCAGGACTTTAGGGTAAAC
CACACCGTCAATTAGGAAATGCACCCGTTTTCCTAAAACTTTAGGATGCT
ACAAGGTCTTGTGTTTCCCCTACCCCATCTGGGAATCAACTACTTCTCCA
GGGTTGATTCCTTTTTTTCAGATGTAAAAACCTGAGCTGCAGCTATCTGT
ACTGTCCCCGAGCATATTGCTTTCTAAACCCTTCAAGAACAGAACAGGAA
ACCCCGTCTCTCTATTAGTAACTCTTGAGTGCTCCCATCTGTGACTATTT
GTCTTGTTTCTATATGTTTCTCTGGGCAATTTCTCAAACTTATTCCTTAT
TTCACATAAATTTTTATGCTTTGCATATATTACTTCTATCTTTAATATCT
TTTTTTCTTTTCTTTTCAATTTTTGATTTTATTTTTTTCTTTTCCTATTC
TTGTTTTTTTCCTTTTTTCTTGTGTTCCTTTCTCTTCTTTTACATTTTTC
GTTTTCCTTTTCTTTTTCTCCTTTTCTCTTTTCTTTTTTTTCTTCTATAT
ATAATATTTTTTATTTTTATTTTCTATCTCATT

CCGTTCTTNNNNNTAAGATGCGAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTTTGTCATTATGATAGTTTT
TATCTGATACTTCTTATACCTATATTTGAACAGCTTCCCTTAAAATTTCA
GAACCTTAAAATATAGCAGTGTTAGTTTTTACATCCCAGAAGTTGGAGGC
TTTATCTAAGTTCATTATCAATCCTTTAGGAACAAGCAGTTTAAAATTCA
GTTAGCTGTTTATATATAGGCATTGAATTCAAACGTGATGAGAGTACGAA
TATTTGGAAAATGTGACAAATGTATGTACACCTATTGAAAACTTAAAAAT
AAGTAAAGCAAAAAATGTATAAAGTTAGAAATCAATTTGTGTAAATGAAG
ATGTGAAGATCTTAAGTGCTCAGCCATTAAGAGTACTGTTTGTTCTTCCA
GAGATCTCTGGTTTATAGCAGCCCATACACAACACATTCTCTGGTCTCTG
CGCACTCGAGTGGCACACAGGCATATGTGCAGGCAAAACACCAAATAGAT
GTAAAATAAACATTTCAAAAAATAAACAAGATTTGGAGATCTTTTTGTCA
GCAATGGACAAGATAATGGTACAAAATCTTAGTAATAGAACTAAATTAAC
TCAACAACTTGTCCTTATTGGTATTTACAGAACTCTCTATCTAACAGTTG
AGAATGTAAGTTTCTTTTATGTTAGTCAGTAGTTATGAATCATATACCAG
CTCATAAAATCAGTGTCAATGAAGTGCAAAGTTTGAAAATGCACAGCAGG
TGTTCTCTGACCATGTGATGTTAGAAGGCAACCAAAAAATCCTTAAACCA
TATATGTTCAGCAACCCTACTAAATCCCATACGGCGCAAAAGAGAAAGAT
AGTTGGAAGGGTTGTTTTCCTGACCTCCCCCTTCCCTCCCCTGCCAATTA
ATATTTGGGCCAAACCCCCTATTTATATGCTGAGTATTTCTTAAACTCCT
GGAAAATTCCAGTGTATATTTTTACAAATGGTTCGAACTTTATAGAGCCT
AATTTGCTATCCCCCTTCACGGTGGACAAATTTATAAATTTCTAACTGAC
CTTTCCTGCCCTTGTGATTTTCACAGATATTTTTGATTTTTTTCTCTCTT
TTCCATCTGGTGTTTCATCTCTTTAAATCCTCTTCTCTCTATTTTCTTCT
TTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_a08.b1 MSMg01no142_a08.b1 CHROMAT_FILE:
MSMg01no142_a08.b1 PHD_FILE: MSMg01no142_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:08 2005
         (683 letters)



>mm_chr9_71640650_71641732
          Length = 1083

 Score = 1183 bits (612), Expect = 0.0
 Identities = 663/680 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctatctgcagagaactaccctttatctcccccttggttatctgggttacctgag 63
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 204 ggaattctatctgcagagaactatcctttatctcccccttggttatctgggttaccttag 263

                                                                       
Query: 64  tatccccttgtgggtattttatcgcattgtgtggctataatacaagctaagcatctctaa 123
           |||   |||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 264 tatagacttgtgggtattttattgtattgtgtggctataatacaagctaagcatctctaa 323

                                                                       
Query: 124 tatgggctttgggttcatacagacatctcagattctaacataagatccaaaattcaaaac 183
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 324 tatgggctttgggttcatacagacatctcagattctaacataagattcaaaattcaaaac 383

                                                                       
Query: 184 tctgtaaaatttgaaactttcttattaccagtatcatgtcataaacacagaattccacat 243
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tctgtaaaattcgaaactttcttattaccagtatcatgtcataaacacagaattccacat 443

                                                                       
Query: 244 catgaaacctcatatcacacccaacagtattaaaactgtaaaattaacctcaggatatac 303
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 catgaatcctcatatcacacccaacagtattaaaactgtaaaattaacctcaggatatac 503

                                                                       
Query: 304 atttaaaggcacatagtgaacacacgtatttagtgtttggtctcagcttagccactatag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 504 atttaaaggcacatagtgaacacacgtatttagtgtttggtctcagcttagccacaagag 563

                                                                       
Query: 364 acctcattatgtaaatacaaatattcagaaacctttcaaggctgactcacttctggtccc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acctcattatgtaaatacaaatattcagaaacctttcaaggctgactcacttctggtccc 623

                                                                       
Query: 424 acacattttcatgttgttattacttattttatccaaattattctagcttccctcattgca 483
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 624 acacattttcatgttgttattacttactttatccaaattattctagcttccctcactgca 683

                                                                       
Query: 484 ggttcctcaggttgggtccacacatcctttttcattcactttctgagatagagtcttagt 543
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggttcctcaggttggttccacacatcctttttcattcactttctgagatagagtcttagt 743

                                                                       
Query: 544 ggctggcctggaacttgccatcttcaacctctggtgtgtcaggactttagggtaaaccac 603
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 744 ggctggcctggaacttgccatcttcaacctctggtgtgtcaggattttagggtaaaccac 803

                                                                       
Query: 604 accgtcaattaggaaatgcacccgttttcctaaaactttaggatgctacaaggtcttgtg 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 accgtcaattaggaaatgcacccgttttcctaaaactttaggatgctacaaggtcttgtg 863

                               
Query: 664 tttcccctaccccatctggg 683
           |||||||| |||||||||||
Sbjct: 864 tttcccctgccccatctggg 883


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space:   722129
Effective search space used:   722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no142_a08.g1 MSMg01no142_a08.g1 CHROMAT_FILE:
MSMg01no142_a08.g1 PHD_FILE: MSMg01no142_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:08 2005
         (653 letters)



>mm_chr9_71788211_71789263
          Length = 1053

 Score =  982 bits (508), Expect = 0.0
 Identities = 523/528 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgatagtttttatctgatacttcttatacctatatttgaacagcttcccttaaaatttc 60
           ||||||||||||||||||||||||||||||  |||||||||||||||   ||||||||||
Sbjct: 528 atgatagtttttatctgatacttcttatacaaatatttgaacagcttaaattaaaatttc 469

                                                                       
Query: 61  agaaccttaaaatatagcagtgttagtttttacatcccagaagttggaggctttatctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 agaaccttaaaatatagcagtgttagtttttacatcccagaagttggaggctttatctaa 409

                                                                       
Query: 121 gttcattatcaatcctttaggaacaagcagtttaaaattcagttagctgtttatatatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gttcattatcaatcctttaggaacaagcagtttaaaattcagttagctgtttatatatag 349

                                                                       
Query: 181 gcattgaattcaaacgtgatgagagtacgaatatttggaaaatgtgacaaatgtatgtac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gcattgaattcaaacgtgatgagagtacgaatatttggaaaatgtgacaaatgtatgtac 289

                                                                       
Query: 241 acctattgaaaacttaaaaataagtaaagcaaaaaatgtataaagttagaaatcaatttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 acctattgaaaacttaaaaataagtaaagcaaaaaatgtataaagttagaaatcaatttg 229

                                                                       
Query: 301 tgtaaatgaagatgtgaagatcttaagtgctcagccattaagagtactgtttgttcttcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tgtaaatgaagatgtgaagatcttaagtgctcagccattaagagtactgtttgttcttcc 169

                                                                       
Query: 361 agagatctctggtttatagcagcccatacacaacacattctctggtctctgcgcactcga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 agagatctctggtttatagcagcccatacacaacacattctctggtctctgcgcactcga 109

                                                                       
Query: 421 gtggcacacaggcatatgtgcaggcaaaacaccaaatagatgtaaaataaacatttcaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 gtggcacacaggcatatgtgcaggcaaaacaccaaatagatgtaaaataaacatttcaaa 49

                                                           
Query: 481 aaataaacaagatttggagatctttttgtcagcaatggacaagataat 528
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48  aaataaacaagatttggagatctttttgtcagcaatggacaagataat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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